GenomeNet

Database: UniProt
Entry: A0A1T5LKC4_9GAMM
LinkDB: A0A1T5LKC4_9GAMM
Original site: A0A1T5LKC4_9GAMM 
ID   A0A1T5LKC4_9GAMM        Unreviewed;       481 AA.
AC   A0A1T5LKC4;
DT   10-MAY-2017, integrated into UniProtKB/TrEMBL.
DT   10-MAY-2017, sequence version 1.
DT   24-JAN-2024, entry version 27.
DE   RecName: Full=RNA polymerase sigma-54 factor {ECO:0000256|ARBA:ARBA00019942, ECO:0000256|PIRNR:PIRNR000774};
GN   ORFNames=SAMN06296058_2664 {ECO:0000313|EMBL:SKC76441.1};
OS   Pseudoxanthomonas indica.
OC   Bacteria; Pseudomonadota; Gammaproteobacteria; Xanthomonadales;
OC   Xanthomonadaceae; Pseudoxanthomonas.
OX   NCBI_TaxID=428993 {ECO:0000313|EMBL:SKC76441.1, ECO:0000313|Proteomes:UP000190341};
RN   [1] {ECO:0000313|EMBL:SKC76441.1, ECO:0000313|Proteomes:UP000190341}
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=P15 {ECO:0000313|EMBL:SKC76441.1,
RC   ECO:0000313|Proteomes:UP000190341};
RA   Peterson S.W.;
RL   Submitted (FEB-2017) to the EMBL/GenBank/DDBJ databases.
CC   -!- FUNCTION: Sigma factors are initiation factors that promote the
CC       attachment of RNA polymerase to specific initiation sites and are then
CC       released. {ECO:0000256|PIRNR:PIRNR000774}.
CC   -!- SIMILARITY: Belongs to the sigma-54 factor family.
CC       {ECO:0000256|ARBA:ARBA00008798, ECO:0000256|PIRNR:PIRNR000774}.
CC   ---------------------------------------------------------------------------
CC   Copyrighted by the UniProt Consortium, see https://www.uniprot.org/terms
CC   Distributed under the Creative Commons Attribution (CC BY 4.0) License
CC   ---------------------------------------------------------------------------
DR   EMBL; FUZV01000002; SKC76441.1; -; Genomic_DNA.
DR   AlphaFoldDB; A0A1T5LKC4; -.
DR   STRING; 428993.SAMN06296058_2664; -.
DR   OrthoDB; 9814402at2; -.
DR   Proteomes; UP000190341; Unassembled WGS sequence.
DR   GO; GO:0000428; C:DNA-directed RNA polymerase complex; IEA:UniProtKB-KW.
DR   GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW.
DR   GO; GO:0001216; F:DNA-binding transcription activator activity; IEA:InterPro.
DR   GO; GO:0016779; F:nucleotidyltransferase activity; IEA:UniProtKB-KW.
DR   GO; GO:0016987; F:sigma factor activity; IEA:UniProtKB-KW.
DR   GO; GO:0006352; P:DNA-templated transcription initiation; IEA:InterPro.
DR   Gene3D; 1.10.10.60; Homeodomain-like; 1.
DR   Gene3D; 1.10.10.1330; RNA polymerase sigma-54 factor, core-binding domain; 1.
DR   InterPro; IPR000394; RNA_pol_sigma_54.
DR   InterPro; IPR007046; RNA_pol_sigma_54_core-bd.
DR   InterPro; IPR007634; RNA_pol_sigma_54_DNA-bd.
DR   InterPro; IPR038709; RpoN_core-bd_sf.
DR   NCBIfam; TIGR02395; rpoN_sigma; 1.
DR   PANTHER; PTHR32248; RNA POLYMERASE SIGMA-54 FACTOR; 1.
DR   PANTHER; PTHR32248:SF4; RNA POLYMERASE SIGMA-54 FACTOR; 1.
DR   Pfam; PF00309; Sigma54_AID; 1.
DR   Pfam; PF04963; Sigma54_CBD; 1.
DR   Pfam; PF04552; Sigma54_DBD; 1.
DR   PIRSF; PIRSF000774; RpoN; 1.
DR   PRINTS; PR00045; SIGMA54FCT.
DR   PROSITE; PS00717; SIGMA54_1; 1.
DR   PROSITE; PS00718; SIGMA54_2; 1.
DR   PROSITE; PS50044; SIGMA54_3; 1.
PE   3: Inferred from homology;
KW   DNA-binding {ECO:0000256|ARBA:ARBA00023125, ECO:0000256|PIRNR:PIRNR000774};
KW   DNA-directed RNA polymerase {ECO:0000256|ARBA:ARBA00022478,
KW   ECO:0000256|PIRNR:PIRNR000774};
KW   Nucleotidyltransferase {ECO:0000256|ARBA:ARBA00022695,
KW   ECO:0000256|PIRNR:PIRNR000774};
KW   Reference proteome {ECO:0000313|Proteomes:UP000190341};
KW   Sigma factor {ECO:0000256|ARBA:ARBA00023082,
KW   ECO:0000256|PIRNR:PIRNR000774};
KW   Transcription {ECO:0000256|ARBA:ARBA00023163,
KW   ECO:0000256|PIRNR:PIRNR000774};
KW   Transcription regulation {ECO:0000256|ARBA:ARBA00023015,
KW   ECO:0000256|PIRNR:PIRNR000774};
KW   Transferase {ECO:0000256|ARBA:ARBA00022679, ECO:0000256|PIRNR:PIRNR000774}.
FT   DOMAIN          115..308
FT                   /note="RNA polymerase sigma factor 54 core-binding"
FT                   /evidence="ECO:0000259|Pfam:PF04963"
FT   DOMAIN          322..479
FT                   /note="RNA polymerase sigma factor 54 DNA-binding"
FT                   /evidence="ECO:0000259|Pfam:PF04552"
FT   REGION          44..111
FT                   /note="Disordered"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   COMPBIAS        70..88
FT                   /note="Basic and acidic residues"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ   SEQUENCE   481 AA;  52496 MW;  292B1F5231ACA9B2 CRC64;
     MKTRLQTSLG QQLVMTPQLR QAIRLLQMST AELEVEITQA VESNPLLDWA EDGPGDGPGA
     SEGADDAPPG ESADGERERE RDGADDDWSP DEGPWTSTGG GGSFDDDDDT GSAAERMAEA
     DTLRDHLLWQ LHLSHLSARD RRIGTALIDA LEEDGYLRET LAGIAETLRP DVEADEDEIL
     VVLHQLQRFD PVGIGARTLG ECLHLQLSVL SDDTPGKALA IRIADGPLDR LPRSGVAGVA
     AELKRPLAEV ETAVQLLRTL DPKPGAQIGE LSGDTYVVPD CVVWRQRGVW RAALAGNTLP
     RINIHRGYEQ MIRQCGESDA GYLKGHLQEA RWLLKSLEAR GETLLKVTRC LIRQQSAFLE
     FGEQALRPLT LREVAAEVGL HESTVSRAIA RKYVRTPRGT LPLRAFFASG IDTDGGGEAS
     STAIQAMIKR LVDQENPRKP LSDAKLADLL KASGVPVARR TVAKYREALH ILSSHERVRL
     D
//
DBGET integrated database retrieval system