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Database: UniProt
Entry: A0A1U8DCC6_ALLSI
LinkDB: A0A1U8DCC6_ALLSI
Original site: A0A1U8DCC6_ALLSI 
ID   A0A1U8DCC6_ALLSI        Unreviewed;       566 AA.
AC   A0A1U8DCC6;
DT   10-MAY-2017, integrated into UniProtKB/TrEMBL.
DT   13-FEB-2019, sequence version 2.
DT   24-JAN-2024, entry version 28.
DE   RecName: Full=Transcription initiation factor IIF subunit alpha {ECO:0000256|RuleBase:RU366044};
GN   Name=GTF2F1 {ECO:0000313|RefSeq:XP_014375374.2};
OS   Alligator sinensis (Chinese alligator).
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Archelosauria; Archosauria; Crocodylia; Alligatoridae; Alligatorinae;
OC   Alligator.
OX   NCBI_TaxID=38654 {ECO:0000313|Proteomes:UP000189705, ECO:0000313|RefSeq:XP_014375374.2};
RN   [1] {ECO:0000313|RefSeq:XP_014375374.2}
RP   IDENTIFICATION.
RG   RefSeq;
RL   Submitted (SEP-2023) to UniProtKB.
CC   -!- FUNCTION: TFIIF is a general transcription initiation factor that binds
CC       to RNA polymerase II and helps to recruit it to the initiation complex
CC       in collaboration with TFIIB. It promotes transcription elongation.
CC       {ECO:0000256|ARBA:ARBA00025232, ECO:0000256|RuleBase:RU366044}.
CC   -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|ARBA:ARBA00004123,
CC       ECO:0000256|RuleBase:RU366044}.
CC   -!- SIMILARITY: Belongs to the TFIIF alpha subunit family.
CC       {ECO:0000256|ARBA:ARBA00005249, ECO:0000256|RuleBase:RU366044}.
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DR   RefSeq; XP_014375374.2; XM_014519888.2.
DR   STRING; 38654.A0A1U8DCC6; -.
DR   KEGG; asn:102371558; -.
DR   InParanoid; A0A1U8DCC6; -.
DR   OrthoDB; 2919205at2759; -.
DR   Proteomes; UP000189705; Unplaced.
DR   GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
DR   GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW.
DR   GO; GO:0032968; P:positive regulation of transcription elongation by RNA polymerase II; IEA:InterPro.
DR   GO; GO:0006367; P:transcription initiation at RNA polymerase II promoter; IEA:InterPro.
DR   CDD; cd00240; TFIIFa; 1.
DR   Gene3D; 1.10.10.10; Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain; 1.
DR   InterPro; IPR008851; TFIIF-alpha.
DR   InterPro; IPR011039; TFIIF_interaction.
DR   InterPro; IPR036388; WH-like_DNA-bd_sf.
DR   InterPro; IPR036390; WH_DNA-bd_sf.
DR   PANTHER; PTHR13011:SF0; GENERAL TRANSCRIPTION FACTOR IIF SUBUNIT 1; 1.
DR   PANTHER; PTHR13011; TFIIF-ALPHA; 1.
DR   Pfam; PF05793; TFIIF_alpha; 1.
DR   SUPFAM; SSF50916; Rap30/74 interaction domains; 1.
DR   SUPFAM; SSF46785; Winged helix' DNA-binding domain; 1.
PE   3: Inferred from homology;
KW   DNA-binding {ECO:0000256|ARBA:ARBA00023125, ECO:0000256|RuleBase:RU366044};
KW   Nucleus {ECO:0000256|ARBA:ARBA00023242, ECO:0000256|RuleBase:RU366044};
KW   Reference proteome {ECO:0000313|Proteomes:UP000189705};
KW   Transcription {ECO:0000256|ARBA:ARBA00023163,
KW   ECO:0000256|RuleBase:RU366044};
KW   Transcription regulation {ECO:0000256|ARBA:ARBA00023015,
KW   ECO:0000256|RuleBase:RU366044}.
FT   REGION          230..507
FT                   /note="Disordered"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   COMPBIAS        231..263
FT                   /note="Basic and acidic residues"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   COMPBIAS        333..352
FT                   /note="Basic and acidic residues"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   COMPBIAS        353..367
FT                   /note="Acidic residues"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   COMPBIAS        368..392
FT                   /note="Basic and acidic residues"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   COMPBIAS        427..452
FT                   /note="Polar residues"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   COMPBIAS        475..502
FT                   /note="Polar residues"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ   SEQUENCE   566 AA;  63002 MW;  99A5EE0118F32E85 CRC64;
     MEWRLPVCLS AAPGGFEWGL GSVSGAYSVH ARGKVPFPGA QLDTCDPVSA AAMTSLGTSS
     QSVTEYVVRV PKTTTKKYNI MAFNAADKVN FASWQQAKME RDLSNKKIYQ EEELPESGAG
     SEFNRKLREE ARRKKYGIIL KEFKAEDQPW ILKVNGKAGR KYKGVKKGGV TENASYYIFT
     QCPDGAFEAF PVHHWYNFTP VAKHRTLTAE EAEEEWERRN KVLNHFSIMQ QRRLKDQDED
     EEEKEKKTKK KGSDLRIHDL EEDLEMSSDE SELSDPDSEK AAKLKKKPAP TKKKKKKKGS
     DDEAFEDSDD GDFEGQEVDY MSDASSSSLE EDVGKPKVTK EEDVPKGIDE ASESSEESEE
     EKAPEEKEEE EEEKKAPTPQ EKKKKKDSSD ESETSEESDI DSETSSALFM AKKKTPPKKE
     RKGSASSSRG NSRPGTPTAD AGSTSSTLRA AANKLEQGKR QGGPGGAPXR TQLDAGGPQP
     TSGKSTPQPQ SGKSTPSSGD VQLTEDAVRR YLTRKPMTTK DLLKKFQTKK TGLSSEQTVN
     VLAQILKRLN PERKMINDKM HFFLKE
//
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