ID A0A1U8I411_GOSHI Unreviewed; 936 AA.
AC A0A1U8I411;
DT 10-MAY-2017, integrated into UniProtKB/TrEMBL.
DT 10-MAY-2017, sequence version 1.
DT 27-MAR-2024, entry version 23.
DE SubName: Full=Transcription initiation factor TFIID subunit 4b-like isoform X3 {ECO:0000313|RefSeq:XP_016672970.1};
GN Name=LOC107892395 {ECO:0000313|RefSeq:XP_016672970.1};
OS Gossypium hirsutum (Upland cotton) (Gossypium mexicanum).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium.
OX NCBI_TaxID=3635 {ECO:0000313|Proteomes:UP000189702, ECO:0000313|RefSeq:XP_016672970.1};
RN [1] {ECO:0000313|Proteomes:UP000189702}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. TM-1 {ECO:0000313|Proteomes:UP000189702};
RX PubMed=25893780; DOI=10.1038/nbt.3208;
RA Li F., Fan G., Lu C., Xiao G., Zou C., Kohel R.J., Ma Z., Shang H., Ma X.,
RA Wu J., Liang X., Huang G., Percy R.G., Liu K., Yang W., Chen W., Du X.,
RA Shi C., Yuan Y., Ye W., Liu X., Zhang X., Liu W., Wei H., Wei S., Huang G.,
RA Zhang X., Zhu S., Zhang H., Sun F., Wang X., Liang J., Wang J., He Q.,
RA Huang L., Wang J., Cui J., Song G., Wang K., Xu X., Yu J.Z., Zhu Y., Yu S.;
RT "Genome sequence of cultivated Upland cotton (Gossypium hirsutum TM-1)
RT provides insights into genome evolution.";
RL Nat. Biotechnol. 33:524-530(2015).
RN [2] {ECO:0000313|RefSeq:XP_016672970.1}
RP IDENTIFICATION.
RC TISSUE=Leaf {ECO:0000313|RefSeq:XP_016672970.1};
RG RefSeq;
RL Submitted (NOV-2023) to UniProtKB.
CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|ARBA:ARBA00004123}.
CC -!- SIMILARITY: Belongs to the TAF4 family.
CC {ECO:0000256|ARBA:ARBA00006178}.
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DR RefSeq; XP_016672970.1; XM_016817481.1.
DR AlphaFoldDB; A0A1U8I411; -.
DR OrthoDB; 1222810at2759; -.
DR Proteomes; UP000189702; Chromosome 14.
DR GO; GO:0005669; C:transcription factor TFIID complex; IEA:InterPro.
DR GO; GO:0046982; F:protein heterodimerization activity; IEA:InterPro.
DR GO; GO:0006352; P:DNA-templated transcription initiation; IEA:InterPro.
DR CDD; cd08045; TAF4; 1.
DR Gene3D; 1.10.20.10; Histone, subunit A; 1.
DR InterPro; IPR009072; Histone-fold.
DR InterPro; IPR022003; RST.
DR InterPro; IPR045144; TAF4.
DR InterPro; IPR007900; TAF4_C.
DR PANTHER; PTHR15138; TRANSCRIPTION INITIATION FACTOR TFIID SUBUNIT 4; 1.
DR PANTHER; PTHR15138:SF14; TRANSCRIPTION INITIATION FACTOR TFIID SUBUNIT 4; 1.
DR Pfam; PF12174; RST; 1.
DR Pfam; PF05236; TAF4; 1.
DR PROSITE; PS51879; RST; 1.
PE 3: Inferred from homology;
KW Nucleus {ECO:0000256|ARBA:ARBA00023242};
KW Reference proteome {ECO:0000313|Proteomes:UP000189702};
KW Transcription {ECO:0000256|ARBA:ARBA00023163};
KW Transcription regulation {ECO:0000256|ARBA:ARBA00023015}.
FT DOMAIN 191..262
FT /note="RST"
FT /evidence="ECO:0000259|PROSITE:PS51879"
FT REGION 10..133
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 148..194
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 273..318
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 331..365
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 445..471
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 535..622
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 827..897
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 34..133
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 165..194
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 298..318
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 346..365
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 543..578
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 607..622
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 855..897
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 936 AA; 102402 MW; EA0FA782F400F7E1 CRC64;
MDPSIVKFFE EDEDESMHSG ADVEAFQAAL NRDIEGDAST SQPPDSDTVL SQGSNRVSSQ
SLAQWPTVGQ DGNANFQHQQ PVQSAQQRSS EMEQKQQGLL VMGSLQQPND VPQGVNCLPP
QQKQPQDDHQ QGVAEQVSAQ VPLMAGIQTT ERSPIPREPE RTNIQDSESQ YAKLQKMSNQ
QAGGTEQPNN QVNRGKQVPF AVLLPSLLPQ LDKDRAMQLH TLYGKLKKNE IAKDGFVRHM
RDIVGDQMLR LAVNKLQVQM SSNQVPLQSQ VAARPNTPRM PSVGGATQFG GPHTLAQLHQ
KGPNSPANSS HPSPPAVLMQ TNSSYLSIEN KVQKSQEMDR QPDSHFGVLK SQNPSSSSTT
VNQERDRASI PVQGINMQQQ HLNFAQTSFG MYGSSNYHTY SGSNVSNSGS CLKPQPHESQ
IRQIPHHQSM GSNPVGGPTQ TMNMMGGPKL ERQNSTNDPN RLQGGSISHF SSNSVSWQAS
SSKELNPGPL SSMTYVKQES VDQVPEQQHG LFLSATHGAS TAIVKEGNAV NATPKDEFLE
KQSSRVGFST PTSMAPPNLL SPSITTQMDS NLPSPSVPAT AGVNGKAPQK KPCAGQKKPL
EALGSSPPLS SKKQKVSGGF SDQSIEQLND VTAVSGVNLR EEEEQLFSGP KDESRVSEAS
RRIVQEEEER VILQKIPLQK KLAEIMAKSG LKNISNDVER CMSLCVEERM HGLLCNLIRL
SKQRVDVEKP RHRTHVTSDV QQHIMMMNRN AREEWEKKQA EAEKLRKLND PEAETTVDGD
KEKDDGRVKV VKANKEEDDK MRATAANVAA RAAVGGDDML SKWQLMAEQA RQKREGGTDS
LSGCQAGKDV NCRPLSASGK NSRDYQESEN RGPLSPPASG SSRKSGRNQG VSTRTRVARS
ISVKDVIAVL EREPQMSKST LIYRLYEKTR SEAAAE
//
