ID A0A1U8IDQ7_GOSHI Unreviewed; 717 AA.
AC A0A1U8IDQ7;
DT 10-MAY-2017, integrated into UniProtKB/TrEMBL.
DT 10-MAY-2017, sequence version 1.
DT 27-MAR-2024, entry version 22.
DE SubName: Full=Uncharacterized protein LOC107895583 {ECO:0000313|RefSeq:XP_016676331.1};
GN Name=LOC107895583 {ECO:0000313|RefSeq:XP_016676331.1};
OS Gossypium hirsutum (Upland cotton) (Gossypium mexicanum).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium.
OX NCBI_TaxID=3635 {ECO:0000313|Proteomes:UP000189702, ECO:0000313|RefSeq:XP_016676331.1};
RN [1] {ECO:0000313|Proteomes:UP000189702}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. TM-1 {ECO:0000313|Proteomes:UP000189702};
RX PubMed=25893780; DOI=10.1038/nbt.3208;
RA Li F., Fan G., Lu C., Xiao G., Zou C., Kohel R.J., Ma Z., Shang H., Ma X.,
RA Wu J., Liang X., Huang G., Percy R.G., Liu K., Yang W., Chen W., Du X.,
RA Shi C., Yuan Y., Ye W., Liu X., Zhang X., Liu W., Wei H., Wei S., Huang G.,
RA Zhang X., Zhu S., Zhang H., Sun F., Wang X., Liang J., Wang J., He Q.,
RA Huang L., Wang J., Cui J., Song G., Wang K., Xu X., Yu J.Z., Zhu Y., Yu S.;
RT "Genome sequence of cultivated Upland cotton (Gossypium hirsutum TM-1)
RT provides insights into genome evolution.";
RL Nat. Biotechnol. 33:524-530(2015).
RN [2] {ECO:0000313|RefSeq:XP_016676331.1}
RP IDENTIFICATION.
RC TISSUE=Leaf {ECO:0000313|RefSeq:XP_016676331.1};
RG RefSeq;
RL Submitted (NOV-2023) to UniProtKB.
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DR RefSeq; XP_016676331.1; XM_016820842.1.
DR AlphaFoldDB; A0A1U8IDQ7; -.
DR PaxDb; 3635-A0A1U8IDQ7; -.
DR GeneID; 107895583; -.
DR KEGG; ghi:107895583; -.
DR OrthoDB; 937976at2759; -.
DR Proteomes; UP000189702; Chromosome 16.
DR GO; GO:0003676; F:nucleic acid binding; IEA:InterPro.
DR GO; GO:0008270; F:zinc ion binding; IEA:InterPro.
DR Gene3D; 3.30.70.270; -; 1.
DR Gene3D; 3.10.10.10; HIV Type 1 Reverse Transcriptase, subunit A, domain 1; 1.
DR Gene3D; 4.10.60.10; Zinc finger, CCHC-type; 1.
DR InterPro; IPR043502; DNA/RNA_pol_sf.
DR InterPro; IPR032567; LDOC1-rel.
DR InterPro; IPR005162; Retrotrans_gag_dom.
DR InterPro; IPR043128; Rev_trsase/Diguanyl_cyclase.
DR InterPro; IPR041577; RT_RNaseH_2.
DR InterPro; IPR001878; Znf_CCHC.
DR InterPro; IPR036875; Znf_CCHC_sf.
DR PANTHER; PTHR15503; LDOC1 RELATED; 1.
DR PANTHER; PTHR15503:SF43; REVERSE TRANSCRIPTASE RNASE H-LIKE DOMAIN-CONTAINING PROTEIN; 1.
DR Pfam; PF03732; Retrotrans_gag; 1.
DR Pfam; PF17919; RT_RNaseH_2; 1.
DR Pfam; PF00098; zf-CCHC; 1.
DR SMART; SM00343; ZnF_C2HC; 1.
DR SUPFAM; SSF56672; DNA/RNA polymerases; 1.
DR SUPFAM; SSF57756; Retrovirus zinc finger-like domains; 1.
DR PROSITE; PS50158; ZF_CCHC; 1.
PE 4: Predicted;
KW Metal-binding {ECO:0000256|PROSITE-ProRule:PRU00047};
KW Reference proteome {ECO:0000313|Proteomes:UP000189702};
KW Zinc {ECO:0000256|PROSITE-ProRule:PRU00047};
KW Zinc-finger {ECO:0000256|PROSITE-ProRule:PRU00047}.
FT DOMAIN 353..368
FT /note="CCHC-type"
FT /evidence="ECO:0000259|PROSITE:PS50158"
FT REGION 1..23
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 285..326
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 373..414
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 300..326
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 383..405
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 717 AA; 81734 MW; 2F966A272E002072 CRC64;
MSDRLDSASQ EEEVNSRIQT SEQGTSGNVW ISLMREEELK NMIYGLMNQW YHETIQGRSQ
AQQPPPPPTV PLVTTPVAPP LTNESSKRTP IEKLRKFGAE EFRGRSDDDP VKAKYWLKSL
ERVFKQMMCS PEDYLRCAVS LLKEEAYNWW ETIEAVVPAD KLTWEFFQNE FKKKYVGKRY
LDKKKREFLD LRQGNKTVAE YEREFVYLSR YARDVVPTEE EMCIRFEEGL NDEIRMMIGG
TEIRGFVVLS DRAQKMEEVY NKKMQREKRG KEVYKRSFSK PTSTFSAKKF RDDSSRPVTI
PERSNKSKTT QQDVGVTKKP ADSVSSVQNI PRLRCKNCGR FHIGECWGRA GACYKCGGTD
HFIRDCPQLL KEDREQGEKQ ANTPQKGKRS GQSSAAGTVH SGTRDTGARS ETRVPARTYA
IRAREEASAP DVIAGNFYLF DDSVEKQIDL KCQTGEIVSV EFGDKKNDVR IILAFTARKL
IRKGNEAFLA YILDTRGSEL KMEQLSVVNE FTDVFPEELP SLPPDCEVEF TIDVISGITP
ISITPYRMTP AELKELKTQL QELLDKGFIR PTEGIRVDPS KVSAVVNWKT LKNITEVRSF
LGLAGYYRRF VNNFSMIASP MTHLLQKNVE FVWSDESQQS FDQLKKMLTE APVLTQPESG
IPYVVYSDAS LSGLGCVLMQ SGKVVAYASR SQKFEILNDS EGTELKTETV VRVAERL
//
