GenomeNet

Database: UniProt
Entry: A0A1U8IG88_GOSHI
LinkDB: A0A1U8IG88_GOSHI
Original site: A0A1U8IG88_GOSHI 
ID   A0A1U8IG88_GOSHI        Unreviewed;       627 AA.
AC   A0A1U8IG88;
DT   10-MAY-2017, integrated into UniProtKB/TrEMBL.
DT   10-MAY-2017, sequence version 1.
DT   24-JAN-2024, entry version 20.
DE   SubName: Full=Pentatricopeptide repeat-containing protein At1g63330-like {ECO:0000313|RefSeq:XP_016675368.1};
GN   Name=LOC107894622 {ECO:0000313|RefSeq:XP_016675368.1};
OS   Gossypium hirsutum (Upland cotton) (Gossypium mexicanum).
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC   rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium.
OX   NCBI_TaxID=3635 {ECO:0000313|Proteomes:UP000189702, ECO:0000313|RefSeq:XP_016675368.1};
RN   [1] {ECO:0000313|Proteomes:UP000189702}
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=cv. TM-1 {ECO:0000313|Proteomes:UP000189702};
RX   PubMed=25893780; DOI=10.1038/nbt.3208;
RA   Li F., Fan G., Lu C., Xiao G., Zou C., Kohel R.J., Ma Z., Shang H., Ma X.,
RA   Wu J., Liang X., Huang G., Percy R.G., Liu K., Yang W., Chen W., Du X.,
RA   Shi C., Yuan Y., Ye W., Liu X., Zhang X., Liu W., Wei H., Wei S., Huang G.,
RA   Zhang X., Zhu S., Zhang H., Sun F., Wang X., Liang J., Wang J., He Q.,
RA   Huang L., Wang J., Cui J., Song G., Wang K., Xu X., Yu J.Z., Zhu Y., Yu S.;
RT   "Genome sequence of cultivated Upland cotton (Gossypium hirsutum TM-1)
RT   provides insights into genome evolution.";
RL   Nat. Biotechnol. 33:524-530(2015).
RN   [2] {ECO:0000313|RefSeq:XP_016675368.1}
RP   IDENTIFICATION.
RC   TISSUE=Leaf {ECO:0000313|RefSeq:XP_016675368.1};
RG   RefSeq;
RL   Submitted (SEP-2023) to UniProtKB.
CC   -!- SIMILARITY: Belongs to the PPR family. P subfamily.
CC       {ECO:0000256|ARBA:ARBA00007626}.
CC   ---------------------------------------------------------------------------
CC   Copyrighted by the UniProt Consortium, see https://www.uniprot.org/terms
CC   Distributed under the Creative Commons Attribution (CC BY 4.0) License
CC   ---------------------------------------------------------------------------
DR   RefSeq; XP_016675368.1; XM_016819879.1.
DR   AlphaFoldDB; A0A1U8IG88; -.
DR   PaxDb; 3635-A0A1U8IG88; -.
DR   GeneID; 107894622; -.
DR   KEGG; ghi:107894622; -.
DR   OrthoDB; 1218109at2759; -.
DR   Proteomes; UP000189702; Chromosome 15.
DR   Gene3D; 1.25.40.10; Tetratricopeptide repeat domain; 5.
DR   InterPro; IPR002885; Pentatricopeptide_rpt.
DR   InterPro; IPR011990; TPR-like_helical_dom_sf.
DR   NCBIfam; TIGR00756; PPR; 13.
DR   PANTHER; PTHR47447; OS03G0856100 PROTEIN; 1.
DR   Pfam; PF12854; PPR_1; 3.
DR   Pfam; PF13041; PPR_2; 5.
DR   SUPFAM; SSF81901; HCP-like; 2.
DR   PROSITE; PS51375; PPR; 13.
PE   3: Inferred from homology;
KW   Reference proteome {ECO:0000313|Proteomes:UP000189702};
KW   Repeat {ECO:0000256|ARBA:ARBA00022737}.
FT   REPEAT          133..167
FT                   /note="PPR"
FT                   /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT   REPEAT          168..202
FT                   /note="PPR"
FT                   /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT   REPEAT          203..237
FT                   /note="PPR"
FT                   /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT   REPEAT          238..272
FT                   /note="PPR"
FT                   /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT   REPEAT          273..307
FT                   /note="PPR"
FT                   /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT   REPEAT          308..342
FT                   /note="PPR"
FT                   /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT   REPEAT          343..377
FT                   /note="PPR"
FT                   /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT   REPEAT          378..412
FT                   /note="PPR"
FT                   /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT   REPEAT          413..447
FT                   /note="PPR"
FT                   /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT   REPEAT          448..482
FT                   /note="PPR"
FT                   /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT   REPEAT          483..517
FT                   /note="PPR"
FT                   /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT   REPEAT          518..552
FT                   /note="PPR"
FT                   /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT   REPEAT          553..587
FT                   /note="PPR"
FT                   /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
SQ   SEQUENCE   627 AA;  70167 MW;  114220621E6EFA87 CRC64;
     MGKLYSSIIL HPIVNGGRNP SNFHSSCSFN TVATHINALS KNSMPARGKP KKYDSLDNVD
     DALFSFNKMI HKYPMPSVVE FNKLLGATVR MKRYAIAVSM CKQMEFFRVS PDVNLIVGFL
     FWGKMLKLGV EPTVVTFSTL INGLCNQSQI SHAVGLFDEM IGQGYRPNLI VYSTILNGLC
     KTGNTYRAVR FLRMMEERGF EPNIVAYSTV IDCLCKNGLL NEALDLFSEV KAKGIRPNIV
     SYNCLIHALC NLGQQKETMQ LLNEMVDNNI SCDIVTYNVL IDAHCKEGMI SEAIEILDTM
     RKHGIEPNLI TYNICIDAYC KEGMLAEAKD IVDTMIKQGI EPDVVTYSVL VDGHCLQNQM
     DKAKSVFQLM IEKGCAPDIH SYNIMINGYC KAKRLDEAME LFDELAQNGQ IPDTVTYNTL
     MQGMCRLGRV STACKLLRMM LTSGPVPNLV TCSILLDGLC KSGKLEEALK LFQAMQKSRL
     EVDIVFYNIL IDGLCKAGNI ETGKELFHEL FVNGLKPDVY TYSIMINRFC TEGLPDEACQ
     LFRSMEENDC LPDSFCYNIM IRGFLRNSYT SKATQLLKEM EEVNVVVEVE SHNHSAQRRG
     YCGARCRGGY SCGRAGHGSR GGLFVYS
//
DBGET integrated database retrieval system