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Database: UniProt
Entry: A0A1U8JNS3_GOSHI
LinkDB: A0A1U8JNS3_GOSHI
Original site: A0A1U8JNS3_GOSHI 
ID   A0A1U8JNS3_GOSHI        Unreviewed;      1063 AA.
AC   A0A1U8JNS3;
DT   10-MAY-2017, integrated into UniProtKB/TrEMBL.
DT   10-MAY-2017, sequence version 1.
DT   24-JAN-2024, entry version 26.
DE   SubName: Full=Pentatricopeptide repeat-containing protein At5g27270-like {ECO:0000313|RefSeq:XP_016691925.1, ECO:0000313|RefSeq:XP_016691926.1};
GN   Name=LOC107909060 {ECO:0000313|RefSeq:XP_016691925.1,
GN   ECO:0000313|RefSeq:XP_016691926.1};
OS   Gossypium hirsutum (Upland cotton) (Gossypium mexicanum).
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC   rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium.
OX   NCBI_TaxID=3635 {ECO:0000313|Proteomes:UP000189702, ECO:0000313|RefSeq:XP_016691926.1};
RN   [1] {ECO:0000313|Proteomes:UP000189702}
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=cv. TM-1 {ECO:0000313|Proteomes:UP000189702};
RX   PubMed=25893780; DOI=10.1038/nbt.3208;
RA   Li F., Fan G., Lu C., Xiao G., Zou C., Kohel R.J., Ma Z., Shang H., Ma X.,
RA   Wu J., Liang X., Huang G., Percy R.G., Liu K., Yang W., Chen W., Du X.,
RA   Shi C., Yuan Y., Ye W., Liu X., Zhang X., Liu W., Wei H., Wei S., Huang G.,
RA   Zhang X., Zhu S., Zhang H., Sun F., Wang X., Liang J., Wang J., He Q.,
RA   Huang L., Wang J., Cui J., Song G., Wang K., Xu X., Yu J.Z., Zhu Y., Yu S.;
RT   "Genome sequence of cultivated Upland cotton (Gossypium hirsutum TM-1)
RT   provides insights into genome evolution.";
RL   Nat. Biotechnol. 33:524-530(2015).
RN   [2] {ECO:0000313|RefSeq:XP_016691925.1, ECO:0000313|RefSeq:XP_016691926.1}
RP   IDENTIFICATION.
RC   TISSUE=Leaf {ECO:0000313|RefSeq:XP_016691925.1,
RC   ECO:0000313|RefSeq:XP_016691926.1};
RG   RefSeq;
RL   Submitted (SEP-2023) to UniProtKB.
CC   -!- SIMILARITY: Belongs to the PPR family. P subfamily.
CC       {ECO:0000256|ARBA:ARBA00007626}.
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DR   RefSeq; XP_016691925.1; XM_016836436.1.
DR   RefSeq; XP_016691926.1; XM_016836437.1.
DR   STRING; 3635.A0A1U8JNS3; -.
DR   PaxDb; 3635-A0A1U8JNS3; -.
DR   GeneID; 107909060; -.
DR   KEGG; ghi:107909060; -.
DR   OrthoDB; 1202574at2759; -.
DR   Proteomes; UP000189702; Chromosome 20.
DR   GO; GO:0005737; C:cytoplasm; IBA:GO_Central.
DR   GO; GO:0003729; F:mRNA binding; IBA:GO_Central.
DR   GO; GO:0006397; P:mRNA processing; IBA:GO_Central.
DR   Gene3D; 1.25.40.10; Tetratricopeptide repeat domain; 8.
DR   InterPro; IPR002885; Pentatricopeptide_rpt.
DR   InterPro; IPR033443; PPR_long.
DR   InterPro; IPR011990; TPR-like_helical_dom_sf.
DR   NCBIfam; TIGR00756; PPR; 11.
DR   PANTHER; PTHR47447; OS03G0856100 PROTEIN; 1.
DR   PANTHER; PTHR47447:SF14; PPR_LONG DOMAIN-CONTAINING PROTEIN; 1.
DR   Pfam; PF01535; PPR; 3.
DR   Pfam; PF13041; PPR_2; 4.
DR   Pfam; PF13812; PPR_3; 2.
DR   Pfam; PF17177; PPR_long; 1.
DR   SUPFAM; SSF81901; HCP-like; 3.
DR   PROSITE; PS51375; PPR; 13.
PE   3: Inferred from homology;
KW   Reference proteome {ECO:0000313|Proteomes:UP000189702};
KW   Repeat {ECO:0000256|ARBA:ARBA00022737}.
FT   REPEAT          185..219
FT                   /note="PPR"
FT                   /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT   REPEAT          255..289
FT                   /note="PPR"
FT                   /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT   REPEAT          290..324
FT                   /note="PPR"
FT                   /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT   REPEAT          325..359
FT                   /note="PPR"
FT                   /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT   REPEAT          360..394
FT                   /note="PPR"
FT                   /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT   DOMAIN          373..487
FT                   /note="Pentacotripeptide-repeat region of PRORP"
FT                   /evidence="ECO:0000259|Pfam:PF17177"
FT   REPEAT          395..429
FT                   /note="PPR"
FT                   /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT   REPEAT          702..736
FT                   /note="PPR"
FT                   /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT   REPEAT          772..806
FT                   /note="PPR"
FT                   /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT   REPEAT          807..841
FT                   /note="PPR"
FT                   /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT   REPEAT          842..876
FT                   /note="PPR"
FT                   /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT   REPEAT          877..911
FT                   /note="PPR"
FT                   /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT   REPEAT          912..946
FT                   /note="PPR"
FT                   /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT   REPEAT          947..981
FT                   /note="PPR"
FT                   /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT   REGION          14..67
FT                   /note="Disordered"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ   SEQUENCE   1063 AA;  120493 MW;  24CF241FBA1B0639 CRC64;
     MESLKSTFLF STTHLHPSFT LPKPPSKPPK LRIRSSVRPD PFSLSDGNPT KPKPKSKNPK
     NPLSDDNARR IIKKKAQYLS ALRRNQGPRA MTPKWIKRTP EQMVKYLEDE RNGELYGKHV
     VAAIKAVRAM GERKEGEADV RRVMGSFVGK LSFRDMCVVL KEQRNWRQVR DFFAWMKLQL
     SYRPSVIVYT IVLRAYGQVG KIKLTEQTFL EILEVGCEPD EVACGTMLCT YARWGRHKAM
     QSFYSAVQER GITLSTAVYN FMLSSLQKKS LHEKVIDLWR QMVDKGVAPD RFTYTVVIHS
     LVKGGLCEEA FKAFDEMKKL EFVPEEATYS LLISSHTKDG KWQDALNLYE DMRSRGIVPS
     NYTCASLLTL YYKNEDYSQA LSLFTEMERN KIAVDEVIYG LLIRIYGKLG LYEDAQRTFE
     EIDQLGLLSD EKTYLAMAQV HLNSGNAKRA LDIIEMMKSR DIWFSRFAYI VSLQCYVMSE
     NLDAAEVTFQ ALAKTGLPDS GSCNDMLRLY IKLNLTGRAK KFIVQLREDQ IAFDEELYRT
     VVRIYCKEGM LEDIGQLTKE MVTNDSYKDN KFIQTFFKAI CGEPLRYQKV KGNVASNQLD
     STALGYLLRL YLECKDFNNL EEILKLLLET AGSMSVLTQL ISNFLKEGDL SNVKALNDQV
     VRLGCSVDDA TIASIIGIYG KEQKLKQAQD IFTAVADSPT CGKLIYNSMI DAYIKCGKPE
     AAYSLYKEAF KKGHDLGAIA ISKVVYSLTT SGKHQEAKEM IHLSFEDNVE LDTVAYNTFI
     KAMLEAGKLN FATSIYEHML SKGLSPSIQT YNTLISVYGR GRKLDKAVEM FNLAHSSGMT
     LDEKAYMNLI CYYGKAGKRD EAFSLFTRMQ EEGINPGMVS YKIMINMYAS AGLCDEVEKL
     IEAMQRDGCS LDNSTYLSLI QAYTKCLKYA EAEQTISCMR RMGIPPTCAH FNLLLYAFAN
     VGMMSEAERV YKELVTTGIS PDLACYRAML RGYIDYGLVE EGINFFEQIR DTAEPDKYIM
     SAAVHIYKYA GKEPEASSVQ DSMNNFGIPF LENLKVGAKM KIP
//
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