ID A0A1U8JQ41_GOSHI Unreviewed; 340 AA.
AC A0A1U8JQ41;
DT 10-MAY-2017, integrated into UniProtKB/TrEMBL.
DT 10-MAY-2017, sequence version 1.
DT 27-MAR-2024, entry version 29.
DE SubName: Full=Methyl-CpG-binding domain-containing protein 2-like {ECO:0000313|RefSeq:XP_016690430.1, ECO:0000313|RefSeq:XP_016690431.1};
GN Name=LOC107907522 {ECO:0000313|RefSeq:XP_016690430.1,
GN ECO:0000313|RefSeq:XP_016690431.1, ECO:0000313|RefSeq:XP_016690432.1,
GN ECO:0000313|RefSeq:XP_016690433.1, ECO:0000313|RefSeq:XP_016690434.1};
OS Gossypium hirsutum (Upland cotton) (Gossypium mexicanum).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium.
OX NCBI_TaxID=3635 {ECO:0000313|Proteomes:UP000189702, ECO:0000313|RefSeq:XP_016690434.1};
RN [1] {ECO:0000313|Proteomes:UP000189702}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. TM-1 {ECO:0000313|Proteomes:UP000189702};
RX PubMed=25893780; DOI=10.1038/nbt.3208;
RA Li F., Fan G., Lu C., Xiao G., Zou C., Kohel R.J., Ma Z., Shang H., Ma X.,
RA Wu J., Liang X., Huang G., Percy R.G., Liu K., Yang W., Chen W., Du X.,
RA Shi C., Yuan Y., Ye W., Liu X., Zhang X., Liu W., Wei H., Wei S., Huang G.,
RA Zhang X., Zhu S., Zhang H., Sun F., Wang X., Liang J., Wang J., He Q.,
RA Huang L., Wang J., Cui J., Song G., Wang K., Xu X., Yu J.Z., Zhu Y., Yu S.;
RT "Genome sequence of cultivated Upland cotton (Gossypium hirsutum TM-1)
RT provides insights into genome evolution.";
RL Nat. Biotechnol. 33:524-530(2015).
RN [2] {ECO:0000313|RefSeq:XP_016690430.1, ECO:0000313|RefSeq:XP_016690431.1}
RP IDENTIFICATION.
RC TISSUE=Leaf {ECO:0000313|RefSeq:XP_016690430.1,
RC ECO:0000313|RefSeq:XP_016690431.1};
RG RefSeq;
RL Submitted (NOV-2023) to UniProtKB.
CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|ARBA:ARBA00004123}.
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DR RefSeq; XP_016690430.1; XM_016834941.1.
DR RefSeq; XP_016690431.1; XM_016834942.1.
DR RefSeq; XP_016690432.1; XM_016834943.1.
DR RefSeq; XP_016690433.1; XM_016834944.1.
DR RefSeq; XP_016690434.1; XM_016834945.1.
DR STRING; 3635.A0A1U8JQ41; -.
DR PaxDb; 3635-A0A1U8JQ41; -.
DR GeneID; 107907522; -.
DR KEGG; ghi:107907522; -.
DR OMA; AHFNSHQ; -.
DR OrthoDB; 1217115at2759; -.
DR Proteomes; UP000189702; Chromosome 19.
DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW.
DR GO; GO:0008270; F:zinc ion binding; IEA:InterPro.
DR CDD; cd01396; MeCP2_MBD; 1.
DR Gene3D; 3.30.40.100; -; 1.
DR InterPro; IPR016177; DNA-bd_dom_sf.
DR InterPro; IPR001739; Methyl_CpG_DNA-bd.
DR InterPro; IPR011124; Znf_CW.
DR PANTHER; PTHR12396:SF0; METHYL-CPG BINDING DOMAIN PROTEIN-LIKE, ISOFORM C; 1.
DR PANTHER; PTHR12396; METHYL-CPG BINDING PROTEIN, MBD; 1.
DR Pfam; PF01429; MBD; 1.
DR Pfam; PF07496; zf-CW; 1.
DR SMART; SM00391; MBD; 1.
DR SUPFAM; SSF54171; DNA-binding domain; 1.
DR PROSITE; PS50982; MBD; 1.
DR PROSITE; PS51050; ZF_CW; 1.
PE 4: Predicted;
KW DNA-binding {ECO:0000256|ARBA:ARBA00023125};
KW Metal-binding {ECO:0000256|ARBA:ARBA00022723};
KW Nucleus {ECO:0000256|ARBA:ARBA00023242};
KW Reference proteome {ECO:0000313|Proteomes:UP000189702};
KW Transcription {ECO:0000256|ARBA:ARBA00023163};
KW Transcription regulation {ECO:0000256|ARBA:ARBA00023015};
KW Zinc {ECO:0000256|ARBA:ARBA00022833};
KW Zinc-finger {ECO:0000256|ARBA:ARBA00022771}.
FT DOMAIN 105..164
FT /note="CW-type"
FT /evidence="ECO:0000259|PROSITE:PS51050"
FT DOMAIN 170..244
FT /note="MBD"
FT /evidence="ECO:0000259|PROSITE:PS50982"
FT REGION 38..61
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 251..340
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 311..340
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 340 AA; 37744 MW; 4E4353F57862501E CRC64;
MQSPPEKAFV MLKREATDLA GSSFTSHVDG TFQDAVNAAA SSASSSSSDD DSQVTQNEDD
LYNGNTSKQL VLYDPAVSST VGCTPPGPVQ CRPPVGPRFS SSKLLPSVGA FTVQCANCFK
WRLIPTKEKY EEIREHILEN PFVCETAREW RPDISCDDPT DISQDGSRLW AIDKPNIAQP
PPGWQRLLRI RGEGSTKFAD IYYQAPTGKR LRSMVEVQKY LIEHPEYATE GVNLSRFSFQ
IPKPLQEDYV RKRPARQTAS HDNEVNPLAW AGPEDTEVQQ GRLALPPPSV EASVSDSPNR
PAKHARRTPS EHMYPSNQVP NKHGSKVEMG SELRNTNYGD
//
