ID A0A1U8K0U2_GOSHI Unreviewed; 1078 AA.
AC A0A1U8K0U2;
DT 10-MAY-2017, integrated into UniProtKB/TrEMBL.
DT 10-MAY-2017, sequence version 1.
DT 27-MAR-2024, entry version 30.
DE SubName: Full=Pentatricopeptide repeat-containing protein At5g09950 {ECO:0000313|RefSeq:XP_016696127.1};
GN Name=LOC107912455 {ECO:0000313|RefSeq:XP_016696127.1};
OS Gossypium hirsutum (Upland cotton) (Gossypium mexicanum).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium.
OX NCBI_TaxID=3635 {ECO:0000313|Proteomes:UP000189702, ECO:0000313|RefSeq:XP_016696127.1};
RN [1] {ECO:0000313|Proteomes:UP000189702}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. TM-1 {ECO:0000313|Proteomes:UP000189702};
RX PubMed=25893780; DOI=10.1038/nbt.3208;
RA Li F., Fan G., Lu C., Xiao G., Zou C., Kohel R.J., Ma Z., Shang H., Ma X.,
RA Wu J., Liang X., Huang G., Percy R.G., Liu K., Yang W., Chen W., Du X.,
RA Shi C., Yuan Y., Ye W., Liu X., Zhang X., Liu W., Wei H., Wei S., Huang G.,
RA Zhang X., Zhu S., Zhang H., Sun F., Wang X., Liang J., Wang J., He Q.,
RA Huang L., Wang J., Cui J., Song G., Wang K., Xu X., Yu J.Z., Zhu Y., Yu S.;
RT "Genome sequence of cultivated Upland cotton (Gossypium hirsutum TM-1)
RT provides insights into genome evolution.";
RL Nat. Biotechnol. 33:524-530(2015).
RN [2] {ECO:0000313|RefSeq:XP_016696127.1}
RP IDENTIFICATION.
RC TISSUE=Leaf {ECO:0000313|RefSeq:XP_016696127.1};
RG RefSeq;
RL Submitted (NOV-2023) to UniProtKB.
CC -!- SIMILARITY: Belongs to the PPR family. PCMP-H subfamily.
CC {ECO:0000256|ARBA:ARBA00006643}.
CC ---------------------------------------------------------------------------
CC Copyrighted by the UniProt Consortium, see https://www.uniprot.org/terms
CC Distributed under the Creative Commons Attribution (CC BY 4.0) License
CC ---------------------------------------------------------------------------
DR RefSeq; XP_016696127.1; XM_016840638.1.
DR AlphaFoldDB; A0A1U8K0U2; -.
DR STRING; 3635.A0A1U8K0U2; -.
DR PaxDb; 3635-A0A1U8K0U2; -.
DR GeneID; 107912455; -.
DR KEGG; ghi:107912455; -.
DR OrthoDB; 445251at2759; -.
DR Proteomes; UP000189702; Chromosome 21.
DR GO; GO:0003723; F:RNA binding; IEA:InterPro.
DR GO; GO:0008270; F:zinc ion binding; IEA:InterPro.
DR GO; GO:0009451; P:RNA modification; IEA:InterPro.
DR Gene3D; 1.25.40.10; Tetratricopeptide repeat domain; 7.
DR InterPro; IPR032867; DYW_dom.
DR InterPro; IPR046848; E_motif.
DR InterPro; IPR046849; Eplus_motif.
DR InterPro; IPR002885; Pentatricopeptide_rpt.
DR InterPro; IPR045215; PPR_prot_At1g15510.
DR InterPro; IPR011990; TPR-like_helical_dom_sf.
DR NCBIfam; TIGR00756; PPR; 6.
DR PANTHER; PTHR24015; OS07G0578800 PROTEIN-RELATED; 1.
DR PANTHER; PTHR24015:SF2034; PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN-RELATED; 1.
DR Pfam; PF14432; DYW_deaminase; 1.
DR Pfam; PF20431; E_motif; 1.
DR Pfam; PF20430; Eplus_motif; 1.
DR Pfam; PF01535; PPR; 5.
DR Pfam; PF13041; PPR_2; 3.
DR PROSITE; PS51375; PPR; 8.
PE 3: Inferred from homology;
KW Reference proteome {ECO:0000313|Proteomes:UP000189702};
KW Repeat {ECO:0000256|ARBA:ARBA00022737}.
FT REPEAT 118..148
FT /note="PPR"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT REPEAT 149..183
FT /note="PPR"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT REPEAT 253..287
FT /note="PPR"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT REPEAT 465..499
FT /note="PPR"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT REPEAT 566..601
FT /note="PPR"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT REPEAT 637..667
FT /note="PPR"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT REPEAT 669..703
FT /note="PPR"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT REPEAT 770..804
FT /note="PPR"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT DOMAIN 987..1078
FT /note="DYW"
FT /evidence="ECO:0000259|Pfam:PF14432"
SQ SEQUENCE 1078 AA; 120062 MW; 49E07FB1D30AFA56 CRC64;
MLRFLFPSTQ IPMRVTCNST LDFTSFAPSL FTTSATNQHL CRPHVLHSLI NPSLPSSIPL
ENLLTHYKTS QSQLSSPPFS ASSFELRESL VTRYRDSRSL TDAKEFHLQV LKHGFNEDVY
LSNSVINVYV RAGDLISARK VFDEMHERNP VTWACLISGY NQNGMPNEAC EVFKEMISMG
VWPTHYAFGS VLRACQELGP CGLQFGLQIH GMISKSQYSF DVVVCNVMIS MYGSCLGSIA
DARRIFDDIQ VKNSISWNSV ISVYSQTGDP VSAFKLFTMM QTECIGSSFN PDEYTFGSLI
TAACSSINFG LCLLEQMLST ITKSGFLSDL YVGSALVNGF ASFGLTNYAT KIFGQMSSRN
VVSMNGLMVG LVRQKCGEEA AKVFMEMMNL VDVNFDSYSI LLSSFSEFSE LEHGRRKGRE
VHSYLIRRGL DDTVVPLGNG LIKMYTRCAD ITAATSVFRL MVNKDLVSWN TMISGLDQNQ
CFEDAVSTFY GMRRTGLMPS NYTVISALSS CASLGWRING QQIHGEALKL GLDVDVSVSN
ALLALYATIG GPPECKNIFS LMLDHDLVSW NSVIGALADS ESSVPEAVKC FLDMMYYGWV
PNKITFINIL VAASSLSLSK LNHQIHALVI KHCLANDRSI ENALLACYGK CGEMDECEKI
FSRMSERRDE ASWNSMISGY IHNELLDKAV HLAWFMMQKG QKLDGFTFAT VLSACASVAT
LEHGMEVHAC SIRACLESDV VVGSAIIDMY SKCGRIDYAS RFFNMMPVRN VYSWNSMISG
YARHGHGDKA LELFMRMKLD GQLPDHVTFV GVLSACSHVG LVDEGFSHFS SMKEVYGLAP
KMEHFSCMVD LLGRAGELDK IEDFINTMPM KPNVLIWRTV LGACCRTNGQ KTELGRKAAE
MLFELEPQNA ANYVLLANMY ASGGNWDGVA EARVAMKKAA AKKEAGCSWV KMKDGVHVFV
AGDKSHPDND MIYAKLKELN RKMRDAGYVP ETRFALYDLE VESKEEILSY HSEKLAVAFV
LTRNSRLPIR IMKNLRVCGD CHMAFKYISK IVGRVIILRD SNRFHHFDEG KCSCGDYW
//
