ID A0A1U8KDX6_GOSHI Unreviewed; 471 AA.
AC A0A1U8KDX6;
DT 10-MAY-2017, integrated into UniProtKB/TrEMBL.
DT 10-MAY-2017, sequence version 1.
DT 27-MAR-2024, entry version 25.
DE SubName: Full=Zinc finger CCCH domain-containing protein 34-like isoform X1 {ECO:0000313|RefSeq:XP_016700710.1, ECO:0000313|RefSeq:XP_016700711.1};
GN Name=LOC107916054 {ECO:0000313|RefSeq:XP_016700710.1,
GN ECO:0000313|RefSeq:XP_016700711.1};
OS Gossypium hirsutum (Upland cotton) (Gossypium mexicanum).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium.
OX NCBI_TaxID=3635 {ECO:0000313|Proteomes:UP000189702, ECO:0000313|RefSeq:XP_016700711.1};
RN [1] {ECO:0000313|Proteomes:UP000189702}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. TM-1 {ECO:0000313|Proteomes:UP000189702};
RX PubMed=25893780; DOI=10.1038/nbt.3208;
RA Li F., Fan G., Lu C., Xiao G., Zou C., Kohel R.J., Ma Z., Shang H., Ma X.,
RA Wu J., Liang X., Huang G., Percy R.G., Liu K., Yang W., Chen W., Du X.,
RA Shi C., Yuan Y., Ye W., Liu X., Zhang X., Liu W., Wei H., Wei S., Huang G.,
RA Zhang X., Zhu S., Zhang H., Sun F., Wang X., Liang J., Wang J., He Q.,
RA Huang L., Wang J., Cui J., Song G., Wang K., Xu X., Yu J.Z., Zhu Y., Yu S.;
RT "Genome sequence of cultivated Upland cotton (Gossypium hirsutum TM-1)
RT provides insights into genome evolution.";
RL Nat. Biotechnol. 33:524-530(2015).
RN [2] {ECO:0000313|RefSeq:XP_016700710.1, ECO:0000313|RefSeq:XP_016700711.1}
RP IDENTIFICATION.
RC TISSUE=Leaf {ECO:0000313|RefSeq:XP_016700710.1,
RC ECO:0000313|RefSeq:XP_016700711.1};
RG RefSeq;
RL Submitted (NOV-2023) to UniProtKB.
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DR RefSeq; XP_016700710.1; XM_016845221.1.
DR RefSeq; XP_016700711.1; XM_016845222.1.
DR STRING; 3635.A0A1U8KDX6; -.
DR PaxDb; 3635-A0A1U8KDX6; -.
DR GeneID; 107916054; -.
DR KEGG; ghi:107916054; -.
DR OrthoDB; 33612at2759; -.
DR Proteomes; UP000189702; Chromosome 22.
DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW.
DR GO; GO:0046872; F:metal ion binding; IEA:UniProtKB-KW.
DR GO; GO:0003729; F:mRNA binding; IBA:GO_Central.
DR Gene3D; 2.30.30.1190; -; 1.
DR Gene3D; 4.10.1000.10; Zinc finger, CCCH-type; 2.
DR InterPro; IPR000571; Znf_CCCH.
DR InterPro; IPR036855; Znf_CCCH_sf.
DR PANTHER; PTHR12506; PROTEIN PHOSPHATASE RELATED; 1.
DR PANTHER; PTHR12506:SF41; ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 58; 1.
DR Pfam; PF00642; zf-CCCH; 5.
DR SMART; SM00356; ZnF_C3H1; 5.
DR SUPFAM; SSF90229; CCCH zinc finger; 5.
DR PROSITE; PS50103; ZF_C3H1; 5.
PE 4: Predicted;
KW DNA-binding {ECO:0000256|ARBA:ARBA00023125};
KW Metal-binding {ECO:0000256|ARBA:ARBA00022723, ECO:0000256|PROSITE-
KW ProRule:PRU00723}; Reference proteome {ECO:0000313|Proteomes:UP000189702};
KW Zinc {ECO:0000256|ARBA:ARBA00022833, ECO:0000256|PROSITE-ProRule:PRU00723};
KW Zinc-finger {ECO:0000256|ARBA:ARBA00022771, ECO:0000256|PROSITE-
KW ProRule:PRU00723}.
FT DOMAIN 41..69
FT /note="C3H1-type"
FT /evidence="ECO:0000259|PROSITE:PS50103"
FT DOMAIN 87..115
FT /note="C3H1-type"
FT /evidence="ECO:0000259|PROSITE:PS50103"
FT DOMAIN 133..161
FT /note="C3H1-type"
FT /evidence="ECO:0000259|PROSITE:PS50103"
FT DOMAIN 294..322
FT /note="C3H1-type"
FT /evidence="ECO:0000259|PROSITE:PS50103"
FT DOMAIN 341..368
FT /note="C3H1-type"
FT /evidence="ECO:0000259|PROSITE:PS50103"
FT ZN_FING 41..69
FT /note="C3H1-type"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00723"
FT ZN_FING 87..115
FT /note="C3H1-type"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00723"
FT ZN_FING 133..161
FT /note="C3H1-type"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00723"
FT ZN_FING 294..322
FT /note="C3H1-type"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00723"
FT ZN_FING 341..368
FT /note="C3H1-type"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00723"
FT REGION 1..36
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 271..294
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 389..428
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 441..471
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 271..291
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 393..428
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 471 AA; 50089 MW; D11EB17845304F4C CRC64;
MERDPESDPQ PEWAAPGPET GLEEPVWRLG LGGESESYPE RPNKANCIYY LRTGFCGYGS
KCRFNHPRDR TGVMGAARGD VGEYPERVGQ PVCQYYMRKG TCKFGSSCKY HHPKQGGDSV
SPVPLNYLGY PLRPGEKECS YFVKTGQCKF GATCKFHHPV PPAVEVPAPS PTSQVAPLPT
PLSSPTLYPR TQSPSGPLSQ QYGVVMASSP LMPGSYVQGP YGQLLISPGM VSFPSWNPYP
AAVSVGPQPA VGSSSMFGVT PLSPSAPAYT RSYQPTPSSV VPSSSIQERS FPERPGQPEC
QYYMKTRNCK YGSSCKYHHP PEVIAPKVDV ILNPLGLPIC PGAPPCIHYS QHGVCKFGVA
CKFDHPMGTL SFSPSASSLT DMPVAPYPIG STGGTLAPSS SSSDLRPEQL SRSNKESAPP
IMSSSVSASS ESVGSIFSKG GLVHHSSAQQ SSQSSFGSGN NSSTTKAQAS S
//
