ID A0A1U8KWP2_GOSHI Unreviewed; 548 AA.
AC A0A1U8KWP2;
DT 10-MAY-2017, integrated into UniProtKB/TrEMBL.
DT 10-MAY-2017, sequence version 1.
DT 27-MAR-2024, entry version 21.
DE SubName: Full=Uncharacterized protein LOC107921492 {ECO:0000313|RefSeq:XP_016706826.1};
GN Name=LOC107921492 {ECO:0000313|RefSeq:XP_016706826.1};
OS Gossypium hirsutum (Upland cotton) (Gossypium mexicanum).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium.
OX NCBI_TaxID=3635 {ECO:0000313|Proteomes:UP000189702, ECO:0000313|RefSeq:XP_016706826.1};
RN [1] {ECO:0000313|Proteomes:UP000189702}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. TM-1 {ECO:0000313|Proteomes:UP000189702};
RX PubMed=25893780; DOI=10.1038/nbt.3208;
RA Li F., Fan G., Lu C., Xiao G., Zou C., Kohel R.J., Ma Z., Shang H., Ma X.,
RA Wu J., Liang X., Huang G., Percy R.G., Liu K., Yang W., Chen W., Du X.,
RA Shi C., Yuan Y., Ye W., Liu X., Zhang X., Liu W., Wei H., Wei S., Huang G.,
RA Zhang X., Zhu S., Zhang H., Sun F., Wang X., Liang J., Wang J., He Q.,
RA Huang L., Wang J., Cui J., Song G., Wang K., Xu X., Yu J.Z., Zhu Y., Yu S.;
RT "Genome sequence of cultivated Upland cotton (Gossypium hirsutum TM-1)
RT provides insights into genome evolution.";
RL Nat. Biotechnol. 33:524-530(2015).
RN [2] {ECO:0000313|RefSeq:XP_016706826.1}
RP IDENTIFICATION.
RC TISSUE=Leaf {ECO:0000313|RefSeq:XP_016706826.1};
RG RefSeq;
RL Submitted (NOV-2023) to UniProtKB.
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DR RefSeq; XP_016706826.1; XM_016851337.1.
DR AlphaFoldDB; A0A1U8KWP2; -.
DR STRING; 3635.A0A1U8KWP2; -.
DR PaxDb; 3635-A0A1U8KWP2; -.
DR OrthoDB; 1105325at2759; -.
DR Proteomes; UP000189702; Chromosome 25.
DR GO; GO:0003676; F:nucleic acid binding; IEA:InterPro.
DR GO; GO:0008270; F:zinc ion binding; IEA:InterPro.
DR CDD; cd00303; retropepsin_like; 1.
DR Gene3D; 2.40.70.10; Acid Proteases; 1.
DR Gene3D; 4.10.60.10; Zinc finger, CCHC-type; 1.
DR InterPro; IPR032567; LDOC1-rel.
DR InterPro; IPR021109; Peptidase_aspartic_dom_sf.
DR InterPro; IPR005162; Retrotrans_gag_dom.
DR InterPro; IPR001878; Znf_CCHC.
DR PANTHER; PTHR15503; LDOC1 RELATED; 1.
DR PANTHER; PTHR15503:SF43; REVERSE TRANSCRIPTASE RNASE H-LIKE DOMAIN-CONTAINING PROTEIN; 1.
DR Pfam; PF03732; Retrotrans_gag; 1.
DR Pfam; PF08284; RVP_2; 1.
DR Pfam; PF00098; zf-CCHC; 1.
DR SMART; SM00343; ZnF_C2HC; 1.
DR SUPFAM; SSF50630; Acid proteases; 1.
DR PROSITE; PS50158; ZF_CCHC; 1.
PE 4: Predicted;
KW Metal-binding {ECO:0000256|PROSITE-ProRule:PRU00047};
KW Reference proteome {ECO:0000313|Proteomes:UP000189702};
KW Zinc {ECO:0000256|PROSITE-ProRule:PRU00047};
KW Zinc-finger {ECO:0000256|PROSITE-ProRule:PRU00047}.
FT DOMAIN 307..324
FT /note="CCHC-type"
FT /evidence="ECO:0000259|PROSITE:PS50158"
FT REGION 20..41
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 249..281
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 330..355
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 249..269
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 330..345
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 548 AA; 62232 MW; D5E2A920D7BD223F CRC64;
MSNEHVEDVD QEMYIRDREL DETESATPGV NPLAGTVPAT ISTPTTRRAP IKELRKYGAT
EFLGLKGIDP STAENWMEST KRVLQQLECT PRESLICAVS LLQGEAYLWW ESVIRHLPTE
YVTWDLFQKE FQKKYVGELY IEDKRQEFLM LKQGNLSVVD YEREFSRLSR YAFEFIPTEA
DSCKRFLRGL RDEIRVQLVS HRITEFVDLV ERAKMVEQVL GLDKKPEIAR STGKRAGITI
SSPLPKRSRE FRDSWKSSFR SDRGDKNRGK QTAVSAGSVK GPSRNIDIPD CEHCGKKHLG
ECWRITRRCF RCGSTDHFIR DCQKNEGALP AASQRSVSTA RGRGSGRGSS LLRGGNIRRS
SDIAIQQSEV KVPARAYVVR TREEGDAHDV VTGIFLLYSE PVYALIDPGS SHSYINSKLV
ELRKLKSEMS RILIEVSSPL GQTVSVDRVC RRCPLMIHDK MFSVDLLIMP FGDFDIILGM
DWLSEYGVIL DCYKKRFGIQ TEDGDRIEVN GIRTSRSTRI ISAIKASKLL RQGCTTYLAY
VINSDLRG
//
