ID A0A1U8LJQ2_GOSHI Unreviewed; 870 AA.
AC A0A1U8LJQ2;
DT 10-MAY-2017, integrated into UniProtKB/TrEMBL.
DT 10-MAY-2017, sequence version 1.
DT 27-MAR-2024, entry version 24.
DE SubName: Full=Uncharacterized protein LOC107928096 isoform X1 {ECO:0000313|RefSeq:XP_016714745.1, ECO:0000313|RefSeq:XP_016714746.1};
GN Name=LOC107928096 {ECO:0000313|RefSeq:XP_016714745.1,
GN ECO:0000313|RefSeq:XP_016714746.1, ECO:0000313|RefSeq:XP_016714747.1,
GN ECO:0000313|RefSeq:XP_016714748.1, ECO:0000313|RefSeq:XP_016714749.1,
GN ECO:0000313|RefSeq:XP_016714750.1, ECO:0000313|RefSeq:XP_016714751.1};
OS Gossypium hirsutum (Upland cotton) (Gossypium mexicanum).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium.
OX NCBI_TaxID=3635 {ECO:0000313|Proteomes:UP000189702, ECO:0000313|RefSeq:XP_016714745.1};
RN [1] {ECO:0000313|Proteomes:UP000189702}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. TM-1 {ECO:0000313|Proteomes:UP000189702};
RX PubMed=25893780; DOI=10.1038/nbt.3208;
RA Li F., Fan G., Lu C., Xiao G., Zou C., Kohel R.J., Ma Z., Shang H., Ma X.,
RA Wu J., Liang X., Huang G., Percy R.G., Liu K., Yang W., Chen W., Du X.,
RA Shi C., Yuan Y., Ye W., Liu X., Zhang X., Liu W., Wei H., Wei S., Huang G.,
RA Zhang X., Zhu S., Zhang H., Sun F., Wang X., Liang J., Wang J., He Q.,
RA Huang L., Wang J., Cui J., Song G., Wang K., Xu X., Yu J.Z., Zhu Y., Yu S.;
RT "Genome sequence of cultivated Upland cotton (Gossypium hirsutum TM-1)
RT provides insights into genome evolution.";
RL Nat. Biotechnol. 33:524-530(2015).
RN [2] {ECO:0000313|RefSeq:XP_016714745.1, ECO:0000313|RefSeq:XP_016714746.1}
RP IDENTIFICATION.
RC TISSUE=Leaf {ECO:0000313|RefSeq:XP_016714745.1,
RC ECO:0000313|RefSeq:XP_016714746.1};
RG RefSeq;
RL Submitted (NOV-2023) to UniProtKB.
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DR RefSeq; XP_016714745.1; XM_016859256.1.
DR RefSeq; XP_016714746.1; XM_016859257.1.
DR RefSeq; XP_016714747.1; XM_016859258.1.
DR RefSeq; XP_016714748.1; XM_016859259.1.
DR RefSeq; XP_016714749.1; XM_016859260.1.
DR RefSeq; XP_016714750.1; XM_016859261.1.
DR RefSeq; XP_016714751.1; XM_016859262.1.
DR PaxDb; 3635-A0A1U8LJQ2; -.
DR GeneID; 107928096; -.
DR KEGG; ghi:107928096; -.
DR OrthoDB; 462469at2759; -.
DR Proteomes; UP000189702; Unplaced.
DR GO; GO:0008623; C:CHRAC; IBA:GO_Central.
DR GO; GO:0000228; C:nuclear chromosome; IBA:GO_Central.
DR GO; GO:0003677; F:DNA binding; IBA:GO_Central.
DR GO; GO:0008270; F:zinc ion binding; IEA:InterPro.
DR GO; GO:0006338; P:chromatin remodeling; IEA:InterPro.
DR GO; GO:0045740; P:positive regulation of DNA replication; IBA:GO_Central.
DR GO; GO:0006355; P:regulation of DNA-templated transcription; IBA:GO_Central.
DR GO; GO:0031445; P:regulation of heterochromatin formation; IBA:GO_Central.
DR Gene3D; 3.30.40.100; -; 1.
DR Gene3D; 3.30.40.10; Zinc/RING finger domain, C3HC4 (zinc finger); 1.
DR InterPro; IPR047171; BAZ1A.
DR InterPro; IPR019786; Zinc_finger_PHD-type_CS.
DR InterPro; IPR011124; Znf_CW.
DR InterPro; IPR011011; Znf_FYVE_PHD.
DR InterPro; IPR001965; Znf_PHD.
DR InterPro; IPR019787; Znf_PHD-finger.
DR InterPro; IPR013083; Znf_RING/FYVE/PHD.
DR PANTHER; PTHR46510; BROMODOMAIN ADJACENT TO ZINC FINGER DOMAIN PROTEIN 1A; 1.
DR PANTHER; PTHR46510:SF1; BROMODOMAIN ADJACENT TO ZINC FINGER DOMAIN PROTEIN 1A; 1.
DR Pfam; PF00628; PHD; 1.
DR SMART; SM00249; PHD; 1.
DR SUPFAM; SSF57903; FYVE/PHD zinc finger; 1.
DR PROSITE; PS51050; ZF_CW; 1.
DR PROSITE; PS01359; ZF_PHD_1; 1.
DR PROSITE; PS50016; ZF_PHD_2; 1.
PE 4: Predicted;
KW Metal-binding {ECO:0000256|ARBA:ARBA00022723};
KW Reference proteome {ECO:0000313|Proteomes:UP000189702};
KW Zinc {ECO:0000256|ARBA:ARBA00022833};
KW Zinc-finger {ECO:0000256|ARBA:ARBA00022771, ECO:0000256|PROSITE-
KW ProRule:PRU00146}.
FT DOMAIN 615..665
FT /note="PHD-type"
FT /evidence="ECO:0000259|PROSITE:PS50016"
FT DOMAIN 763..826
FT /note="CW-type"
FT /evidence="ECO:0000259|PROSITE:PS51050"
FT REGION 845..870
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 870 AA; 95597 MW; C6933C974509377B CRC64;
MSGNETWQMT PKCDGTSQSG CKEAGDSCLP FPKIGSQQSS VSMMFESPTP ILVYRRKKRW
GCSSSASAVV ANFCAQELVN SKRSVDCFSV LSSNALSEAV MEQKGVSRVE HETATKTSLC
DWMSGNETWQ MIPKCDGTSQ AGCKEAEDSC LPLPKTGSQQ PSVSVMFESP MPISVYSRGK
KRWGSSSSAS SVVANFYARE HVNSKRSADC LSVVSSDALS EAVMERKGVS QVEHETATKI
SLCDWMSGNE TCKMTPKCDG TSQSGCKEAE DSCLPLPKTG SQQSSVSMRF ESPIPILIYR
RKKRWGRSSS ANAVVANFCA QELVNSKRSA NCLSVVSSDA LSEAVMERKG VSQVEHETAI
KISLCDWISD NETFRMTPKC DGTSQPGCKE AEDSRLPLPK TGSQRLSVSV MFESPMPILV
YSRRKKRWRS SSIASAAVAN FCAQEPVNSK RSTDCLSVVI SDVLSEAVMG QKRVPRVEHE
IATVRAPVMP LACSRGPHIS KYEIANGCSG VYDHISDDVH KTVVQKTIDV DSINDSCSSS
KSNMELALAS TKDEMDENGE CSSSSVIAAE VAMEDLSEKD ACHNILRNQG NVDEVGPSRN
CVNEETGITS GGSCSRFCKS CSRSGTVQKM LICDSCEEAF HVRCCTPRIK KLPVDEWYCI
MCMKQKRIML KETTASKASS ITGVMGRSRD KSPKGEFSPI ELMLRDTEPY RTSVRIGKGF
QAEIPDWSGP IDNDVDNIGE PLELDPSEFT DFRGANCNKS SKLSLIGNWL QCREFIEGVG
GTKGTICGKW RRAPLLEVQT DNWECFCCVQ WDPSLADCSV PQELETEEVL KQLKYLEMLR
PRLSADRRKS DRTNNCTSQD RKCDMRNAKS
//
