GenomeNet

Database: UniProt
Entry: A0A1U8M0G5_GOSHI
LinkDB: A0A1U8M0G5_GOSHI
Original site: A0A1U8M0G5_GOSHI 
ID   A0A1U8M0G5_GOSHI        Unreviewed;       526 AA.
AC   A0A1U8M0G5;
DT   10-MAY-2017, integrated into UniProtKB/TrEMBL.
DT   10-MAY-2017, sequence version 1.
DT   24-JAN-2024, entry version 29.
DE   SubName: Full=Transcription initiation factor TFIID subunit 6-like isoform X1 {ECO:0000313|RefSeq:XP_016720277.1};
GN   Name=LOC107932708 {ECO:0000313|RefSeq:XP_016720277.1};
OS   Gossypium hirsutum (Upland cotton) (Gossypium mexicanum).
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC   rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium.
OX   NCBI_TaxID=3635 {ECO:0000313|Proteomes:UP000189702, ECO:0000313|RefSeq:XP_016720277.1};
RN   [1] {ECO:0000313|Proteomes:UP000189702}
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=cv. TM-1 {ECO:0000313|Proteomes:UP000189702};
RX   PubMed=25893780; DOI=10.1038/nbt.3208;
RA   Li F., Fan G., Lu C., Xiao G., Zou C., Kohel R.J., Ma Z., Shang H., Ma X.,
RA   Wu J., Liang X., Huang G., Percy R.G., Liu K., Yang W., Chen W., Du X.,
RA   Shi C., Yuan Y., Ye W., Liu X., Zhang X., Liu W., Wei H., Wei S., Huang G.,
RA   Zhang X., Zhu S., Zhang H., Sun F., Wang X., Liang J., Wang J., He Q.,
RA   Huang L., Wang J., Cui J., Song G., Wang K., Xu X., Yu J.Z., Zhu Y., Yu S.;
RT   "Genome sequence of cultivated Upland cotton (Gossypium hirsutum TM-1)
RT   provides insights into genome evolution.";
RL   Nat. Biotechnol. 33:524-530(2015).
RN   [2] {ECO:0000313|RefSeq:XP_016720277.1}
RP   IDENTIFICATION.
RC   TISSUE=Leaf {ECO:0000313|RefSeq:XP_016720277.1};
RG   RefSeq;
RL   Submitted (SEP-2023) to UniProtKB.
CC   -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|ARBA:ARBA00004123}.
CC   -!- SIMILARITY: Belongs to the TAF6 family.
CC       {ECO:0000256|ARBA:ARBA00007688}.
CC   ---------------------------------------------------------------------------
CC   Copyrighted by the UniProt Consortium, see https://www.uniprot.org/terms
CC   Distributed under the Creative Commons Attribution (CC BY 4.0) License
CC   ---------------------------------------------------------------------------
DR   RefSeq; XP_016720277.1; XM_016864788.1.
DR   AlphaFoldDB; A0A1U8M0G5; -.
DR   STRING; 3635.A0A1U8M0G5; -.
DR   PaxDb; 3635-A0A1U8M0G5; -.
DR   GeneID; 107932708; -.
DR   KEGG; ghi:107932708; -.
DR   OMA; YFVQFIA; -.
DR   OrthoDB; 1529at2759; -.
DR   Proteomes; UP000189702; Unplaced.
DR   GO; GO:0000124; C:SAGA complex; IEA:InterPro.
DR   GO; GO:0046695; C:SLIK (SAGA-like) complex; IEA:InterPro.
DR   GO; GO:0005669; C:transcription factor TFIID complex; IBA:GO_Central.
DR   GO; GO:0046982; F:protein heterodimerization activity; IEA:InterPro.
DR   GO; GO:0016251; F:RNA polymerase II general transcription initiation factor activity; IEA:InterPro.
DR   GO; GO:0003713; F:transcription coactivator activity; IBA:GO_Central.
DR   GO; GO:0051123; P:RNA polymerase II preinitiation complex assembly; IBA:GO_Central.
DR   CDD; cd08050; TAF6C; 1.
DR   Gene3D; 1.10.20.10; Histone, subunit A; 1.
DR   Gene3D; 1.25.40.770; TAF6, C-terminal HEAT repeat domain; 1.
DR   InterPro; IPR016024; ARM-type_fold.
DR   InterPro; IPR009072; Histone-fold.
DR   InterPro; IPR037796; TAF6.
DR   InterPro; IPR011442; TAF6_C.
DR   InterPro; IPR046344; TAF6_C_sf.
DR   InterPro; IPR004823; TAF_TATA-bd_Histone-like_dom.
DR   PANTHER; PTHR10221; TRANSCRIPTION INITIATION FACTOR TFIID SUBUNIT 6; 1.
DR   PANTHER; PTHR10221:SF9; TRANSCRIPTION INITIATION FACTOR TFIID SUBUNIT 6; 1.
DR   Pfam; PF02969; TAF; 1.
DR   Pfam; PF07571; TAF6_C; 1.
DR   SMART; SM00803; TAF; 1.
DR   SUPFAM; SSF48371; ARM repeat; 1.
DR   SUPFAM; SSF47113; Histone-fold; 1.
PE   3: Inferred from homology;
KW   Nucleus {ECO:0000256|ARBA:ARBA00023242};
KW   Reference proteome {ECO:0000313|Proteomes:UP000189702};
KW   Transcription {ECO:0000256|ARBA:ARBA00023163};
KW   Transcription regulation {ECO:0000256|ARBA:ARBA00023015}.
FT   DOMAIN          2..68
FT                   /note="TATA box binding protein associated factor (TAF)
FT                   histone-like fold"
FT                   /evidence="ECO:0000259|SMART:SM00803"
SQ   SEQUENCE   526 AA;  58505 MW;  51CEFD208B26A342 CRC64;
     MSNVPKEAIE VIAQSIGITN LSPDVALALA PDVEYRVREI MQEAIKCMRH SRRTVLTTDD
     VDSALNLRNV EPICGFASRD ALRFKKAAGH KDLFYIDDKD VEFKEVLESP LPKAPLDTSV
     TSHWLAIEGI QPAIPENASI EAPSDGKKAE YKEDGLSVDV KLPIKHVLSR ELQLYFDKIV
     DITMNKSVSI LFKQALLSLA TDSGLHPLVP YFTCFIADEV ARNLNNFPLM FCLMRVARSL
     LQNEHLHIEP YLHQLMPSII TCLVAKRLGN KFTENHWELR NFAAKLVASI CKRFGHVYHN
     LQPRVTRTLL HAFLDPTKTF PQHYGAIQGL AALGPSVVRL LILPNLEAYL QLLEPEIKRH
     EAWCVYGALL RAAGLCMYDR LKMFPSLLAP PTRPVWKSNN KVATNKRKAS TDTLMQQQPP
     AKKIATESAI GMMPINSMQT DLQGAVSGFS TTVGGSNIGV SSMSRPLSND NMLGREVGGR
     VSKTSTVLAQ AWKEDTDPGN LLASLFELFG ESMLSFTPKP ELSFFL
//
DBGET integrated database retrieval system