GenomeNet

Database: UniProt
Entry: A0A1U8MU20_GOSHI
LinkDB: A0A1U8MU20_GOSHI
Original site: A0A1U8MU20_GOSHI 
ID   A0A1U8MU20_GOSHI        Unreviewed;       840 AA.
AC   A0A1U8MU20;
DT   10-MAY-2017, integrated into UniProtKB/TrEMBL.
DT   10-MAY-2017, sequence version 1.
DT   24-JAN-2024, entry version 23.
DE   SubName: Full=SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 3-like 2 isoform X2 {ECO:0000313|RefSeq:XP_016730322.1};
GN   Name=LOC107941274 {ECO:0000313|RefSeq:XP_016730322.1};
OS   Gossypium hirsutum (Upland cotton) (Gossypium mexicanum).
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC   rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium.
OX   NCBI_TaxID=3635 {ECO:0000313|Proteomes:UP000189702, ECO:0000313|RefSeq:XP_016730322.1};
RN   [1] {ECO:0000313|Proteomes:UP000189702}
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=cv. TM-1 {ECO:0000313|Proteomes:UP000189702};
RX   PubMed=25893780; DOI=10.1038/nbt.3208;
RA   Li F., Fan G., Lu C., Xiao G., Zou C., Kohel R.J., Ma Z., Shang H., Ma X.,
RA   Wu J., Liang X., Huang G., Percy R.G., Liu K., Yang W., Chen W., Du X.,
RA   Shi C., Yuan Y., Ye W., Liu X., Zhang X., Liu W., Wei H., Wei S., Huang G.,
RA   Zhang X., Zhu S., Zhang H., Sun F., Wang X., Liang J., Wang J., He Q.,
RA   Huang L., Wang J., Cui J., Song G., Wang K., Xu X., Yu J.Z., Zhu Y., Yu S.;
RT   "Genome sequence of cultivated Upland cotton (Gossypium hirsutum TM-1)
RT   provides insights into genome evolution.";
RL   Nat. Biotechnol. 33:524-530(2015).
RN   [2] {ECO:0000313|RefSeq:XP_016730322.1}
RP   IDENTIFICATION.
RC   TISSUE=Leaf {ECO:0000313|RefSeq:XP_016730322.1};
RG   RefSeq;
RL   Submitted (SEP-2023) to UniProtKB.
CC   -!- SIMILARITY: Belongs to the SNF2/RAD54 helicase family. RAD16 subfamily.
CC       {ECO:0000256|ARBA:ARBA00008438}.
CC   ---------------------------------------------------------------------------
CC   Copyrighted by the UniProt Consortium, see https://www.uniprot.org/terms
CC   Distributed under the Creative Commons Attribution (CC BY 4.0) License
CC   ---------------------------------------------------------------------------
DR   RefSeq; XP_016730322.1; XM_016874833.1.
DR   AlphaFoldDB; A0A1U8MU20; -.
DR   GeneID; 107941274; -.
DR   OrthoDB; 11932at2759; -.
DR   Proteomes; UP000189702; Unplaced.
DR   GO; GO:0005524; F:ATP binding; IEA:InterPro.
DR   GO; GO:0140658; F:ATP-dependent chromatin remodeler activity; IEA:InterPro.
DR   GO; GO:0016818; F:hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides; IEA:InterPro.
DR   GO; GO:0003676; F:nucleic acid binding; IEA:InterPro.
DR   GO; GO:0008270; F:zinc ion binding; IEA:InterPro.
DR   CDD; cd18008; DEXDc_SHPRH-like; 1.
DR   CDD; cd16449; RING-HC; 1.
DR   Gene3D; 3.40.50.300; P-loop containing nucleotide triphosphate hydrolases; 1.
DR   Gene3D; 3.40.50.10810; Tandem AAA-ATPase domain; 2.
DR   Gene3D; 3.30.40.10; Zinc/RING finger domain, C3HC4 (zinc finger); 1.
DR   InterPro; IPR014001; Helicase_ATP-bd.
DR   InterPro; IPR014905; HIRAN.
DR   InterPro; IPR027417; P-loop_NTPase.
DR   InterPro; IPR038718; SNF2-like_sf.
DR   InterPro; IPR000330; SNF2_N.
DR   InterPro; IPR027370; Znf-RING_euk.
DR   InterPro; IPR001841; Znf_RING.
DR   InterPro; IPR013083; Znf_RING/FYVE/PHD.
DR   InterPro; IPR017907; Znf_RING_CS.
DR   PANTHER; PTHR45626:SF45; DNA REPAIR PROTEIN RAD5A; 1.
DR   PANTHER; PTHR45626; TRANSCRIPTION TERMINATION FACTOR 2-RELATED; 1.
DR   Pfam; PF08797; HIRAN; 1.
DR   Pfam; PF00176; SNF2-rel_dom; 1.
DR   Pfam; PF13445; zf-RING_UBOX; 1.
DR   SMART; SM00487; DEXDc; 1.
DR   SMART; SM00910; HIRAN; 1.
DR   SMART; SM00184; RING; 1.
DR   SUPFAM; SSF52540; P-loop containing nucleoside triphosphate hydrolases; 2.
DR   SUPFAM; SSF57850; RING/U-box; 1.
DR   PROSITE; PS51192; HELICASE_ATP_BIND_1; 1.
DR   PROSITE; PS00518; ZF_RING_1; 1.
DR   PROSITE; PS50089; ZF_RING_2; 1.
PE   3: Inferred from homology;
KW   Hydrolase {ECO:0000256|ARBA:ARBA00022801};
KW   Metal-binding {ECO:0000256|ARBA:ARBA00022723};
KW   Reference proteome {ECO:0000313|Proteomes:UP000189702};
KW   Zinc {ECO:0000256|ARBA:ARBA00022833};
KW   Zinc-finger {ECO:0000256|ARBA:ARBA00022771, ECO:0000256|PROSITE-
KW   ProRule:PRU00175}.
FT   DOMAIN          413..630
FT                   /note="Helicase ATP-binding"
FT                   /evidence="ECO:0000259|PROSITE:PS51192"
FT   DOMAIN          802..840
FT                   /note="RING-type"
FT                   /evidence="ECO:0000259|PROSITE:PS50089"
FT   REGION          303..323
FT                   /note="Disordered"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   REGION          445..470
FT                   /note="Disordered"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   COMPBIAS        304..321
FT                   /note="Polar residues"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ   SEQUENCE   840 AA;  93034 MW;  37CFD00FDC89C62F CRC64;
     MGGNKVSEDL ISTVRLIVGS DYSEMDIIRA LHLAKHDATA AINIIFDSPR SFKPREKQIE
     PESEPVVRIS SSDISTVSVK PKKTGKENKD FSFSSNGNVA CGGNDLEDEG NVRLENDWGF
     VGSSEVPGLS TSKGRKIKVG EEVSFTFPLK GTGSSPAGSM GKGFGKGRAA AACSEIVRFS
     TKNFGEIGRI PNEWARCLLP LVRDKKIRVE GRCKSAPDVL GVMDTVLLLL SVYINSSMFH
     KYQQTSLKAA SNCNDESIVH PLPSLFRLLG LTPFKKAELA PGDLYTKKRP LETKDGSGIH
     TPLLTANKFK NPSQNGNEVE NDESISDADL ENIVGVGDNS ELEEMDPPST LQCELRPYQK
     QALQWMFQVE KGNCMDEAAT TLHPCWEAYR LADRRDPVIY LNAFTGDATI EFPSTHQMAR
     GGILADAMGL GKTIMTISLL ATHSERGGLS DSQSSDQPSD QGGEAIDVFS QSPNSVKTAT
     KFPGFDKLSK QRNKLANGGN LIICPMTLLG QWKAEIETHV QPGSLSLYVH YGQSRPKDAK
     LLAQNDVVIT TYGVLASEFS AENSEDNGGL YSVRWFRIVL DEAHTIKSSK SQISMAAAAL
     VADRRWCLTG TPIQNKLEDL YSLLRFLKVE PWGNWPWWNK LIQKPFEEGD QRGLKLVQSI
     LKPIMLRRTK CSTDRYGKPI LVLPPADVQV IYCELSEAEK DFYEALFKRS KVKFDQFVEQ
     GRVLHNYASI LELLLRLRQC CDHPFLVMSR GDTQEYTDLN KLAKRFLRGG QSTLDGEAKD
     LPSRAYVQEV VEELRKGEQG ECPICLEAFE DAVLTPCAHR LCRECLLASW RNPNSGLCPV
//
DBGET integrated database retrieval system