GenomeNet

Database: UniProt
Entry: A0A1U8N5Y1_GOSHI
LinkDB: A0A1U8N5Y1_GOSHI
Original site: A0A1U8N5Y1_GOSHI 
ID   A0A1U8N5Y1_GOSHI        Unreviewed;       948 AA.
AC   A0A1U8N5Y1;
DT   10-MAY-2017, integrated into UniProtKB/TrEMBL.
DT   10-MAY-2017, sequence version 1.
DT   31-JUL-2019, entry version 16.
DE   SubName: Full=endoribonuclease Dicer homolog 2-like {ECO:0000313|RefSeq:XP_016733263.1};
GN   Name=LOC107943956 {ECO:0000313|RefSeq:XP_016733263.1};
OS   Gossypium hirsutum (Upland cotton) (Gossypium mexicanum).
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
OC   Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae;
OC   Gossypium.
OX   NCBI_TaxID=3635 {ECO:0000313|Proteomes:UP000189702, ECO:0000313|RefSeq:XP_016733263.1};
RN   [1] {ECO:0000313|Proteomes:UP000189702}
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=cv. TM-1 {ECO:0000313|Proteomes:UP000189702};
RX   PubMed=25893780; DOI=10.1038/nbt.3208;
RA   Li F., Fan G., Lu C., Xiao G., Zou C., Kohel R.J., Ma Z., Shang H.,
RA   Ma X., Wu J., Liang X., Huang G., Percy R.G., Liu K., Yang W.,
RA   Chen W., Du X., Shi C., Yuan Y., Ye W., Liu X., Zhang X., Liu W.,
RA   Wei H., Wei S., Huang G., Zhang X., Zhu S., Zhang H., Sun F., Wang X.,
RA   Liang J., Wang J., He Q., Huang L., Wang J., Cui J., Song G., Wang K.,
RA   Xu X., Yu J.Z., Zhu Y., Yu S.;
RT   "Genome sequence of cultivated Upland cotton (Gossypium hirsutum TM-1)
RT   provides insights into genome evolution.";
RL   Nat. Biotechnol. 33:524-530(2015).
RN   [2] {ECO:0000313|RefSeq:XP_016733263.1}
RP   IDENTIFICATION.
RC   TISSUE=Leaf {ECO:0000313|RefSeq:XP_016733263.1};
RG   RefSeq;
RL   Submitted (APR-2017) to UniProtKB.
CC   -----------------------------------------------------------------------
CC   Copyrighted by the UniProt Consortium, see https://www.uniprot.org/terms
CC   Distributed under the Creative Commons Attribution (CC BY 4.0) License
CC   -----------------------------------------------------------------------
DR   RefSeq; XP_016733263.1; XM_016877774.1.
DR   GeneID; 107943956; -.
DR   KEGG; ghi:107943956; -.
DR   KO; K11592; -.
DR   Proteomes; UP000189702; Genome assembly.
DR   GO; GO:0004525; F:ribonuclease III activity; IEA:InterPro.
DR   GO; GO:0003723; F:RNA binding; IEA:UniProtKB-UniRule.
DR   GO; GO:0031047; P:gene silencing by RNA; IEA:UniProtKB-KW.
DR   GO; GO:0006396; P:RNA processing; IEA:InterPro.
DR   CDD; cd00593; RIBOc; 2.
DR   Gene3D; 1.10.1520.10; -; 2.
DR   Gene3D; 3.30.160.380; -; 1.
DR   InterPro; IPR038248; Dicer_dimer_sf.
DR   InterPro; IPR005034; Dicer_dimerisation_dom.
DR   InterPro; IPR014720; dsRBD_dom.
DR   InterPro; IPR001650; Helicase_C.
DR   InterPro; IPR027417; P-loop_NTPase.
DR   InterPro; IPR003100; PAZ_dom.
DR   InterPro; IPR036085; PAZ_dom_sf.
DR   InterPro; IPR000999; RNase_III_dom.
DR   InterPro; IPR036389; RNase_III_sf.
DR   Pfam; PF03368; Dicer_dimer; 1.
DR   Pfam; PF00035; dsrm; 1.
DR   Pfam; PF00271; Helicase_C; 1.
DR   Pfam; PF02170; PAZ; 1.
DR   Pfam; PF00636; Ribonuclease_3; 2.
DR   SMART; SM00949; PAZ; 1.
DR   SMART; SM00535; RIBOc; 2.
DR   SUPFAM; SSF101690; SSF101690; 1.
DR   SUPFAM; SSF52540; SSF52540; 1.
DR   SUPFAM; SSF69065; SSF69065; 2.
DR   PROSITE; PS51327; DICER_DSRBF; 1.
DR   PROSITE; PS50137; DS_RBD; 1.
DR   PROSITE; PS50821; PAZ; 1.
DR   PROSITE; PS00517; RNASE_3_1; 1.
DR   PROSITE; PS50142; RNASE_3_2; 2.
PE   4: Predicted;
KW   Complete proteome {ECO:0000313|Proteomes:UP000189702};
KW   Reference proteome {ECO:0000313|Proteomes:UP000189702};
KW   RNA-binding {ECO:0000256|PROSITE-ProRule:PRU00266};
KW   RNA-mediated gene silencing {ECO:0000256|SAAS:SAAS00703041}.
FT   DOMAIN      113    199       Dicer dsRNA-binding fold.
FT                                {ECO:0000259|PROSITE:PS51327}.
FT   DOMAIN      387    485       PAZ. {ECO:0000259|PROSITE:PS50821}.
FT   DOMAIN      536    668       RNase III. {ECO:0000259|PROSITE:PS50142}.
FT   DOMAIN      704    851       RNase III. {ECO:0000259|PROSITE:PS50142}.
FT   DOMAIN      877    944       DRBM. {ECO:0000259|PROSITE:PS50137}.
SQ   SEQUENCE   948 AA;  107535 MW;  A548DBAC37784854 CRC64;
     MVNIIVATSI LEEGLDVQSC NLIIRFDPSP TICSFIQSRG RARMQNSDYL LMLKSGDFST
     HSRLKNYLTS GDVMRKESLR HASNPCSPLS KGLDDEEFYQ VASTGACMTL SSSVGLMYFY
     CSRLPADGYF KPIPRCVIDK QMGLCTLLLP KSCPIQTVCV QGNIKNLKKI ACFEACKKLH
     QIGALTDNLV PDIVFEENDV EEFEKEPYND DQPIFFPPEL VNKGSLDSMT KYYCYLMELK
     QNFDYEVPVH NIMLLVRNQF DMDEKSVNIE LEVDRGTLTV NMKYIGLIRL NSDQVILCRR
     FQLAVFQVLM DRKAEKLAEV LCDHTLGNNS EIDYLLLPSN YVGQSPLIDW LSVTSVTFSY
     EKAWKNHVNC NAGMIQTKSS LVCTCMVQNS LVFTPHNGHA YIISGLLTNI NANSLLRLSD
     GRLMTYKEYY EQRHSINFCY SEVSFLAGRH IFPVQNHIQR CRKQKEKESS NALVELPPEL
     CCVVMSPISV STFYSFTFLP SIMHRLESLL LATSLKKMHL DHCVQNIAIP TMKVLEAITT
     KKCLENFHLE SLETLGDSFL KYAVCQQLFK KYQNHHEGLL SIRKDKIISN TALSMLGCDK
     KLPGFIRDEP FDTKDWMIPG YNCGNYSLNE ETLCNAKKIY VRGRRKLKCK KVADVVEALI
     GAYLSTGGEA AGLLFLDWIG ISIDFTNIPY ERHFKVRAEK FVNVQHFESL LHYSFQDPSL
     LVEALTHGSY MLAEIPGCYQ RLEFLGDSVL DYLITLHLYN KYPGITPGLL TDLRSASVNN
     NCYALSAVKA GFHKHILQSS QKLYKDIKET VESFQELSLE YTFGWESEKS FPKVLGDVVE
     SLAGAIFVDS GYKKEIVFQS IRPLLEPMIT PETMTVHPVK ELYELCQKEH YELRKAIVSQ
     EDGISSITIE VEANGKVFKH TSTACDKKMA KKLASKEVLK SLKGANFS
//
DBGET integrated database retrieval system