ID A0A1U8NVP6_GOSHI Unreviewed; 381 AA.
AC A0A1U8NVP6;
DT 10-MAY-2017, integrated into UniProtKB/TrEMBL.
DT 10-MAY-2017, sequence version 1.
DT 27-MAR-2024, entry version 20.
DE SubName: Full=Uncharacterized protein LOC107952266 {ECO:0000313|RefSeq:XP_016743022.1};
GN Name=LOC107952266 {ECO:0000313|RefSeq:XP_016743022.1};
OS Gossypium hirsutum (Upland cotton) (Gossypium mexicanum).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium.
OX NCBI_TaxID=3635 {ECO:0000313|Proteomes:UP000189702, ECO:0000313|RefSeq:XP_016743022.1};
RN [1] {ECO:0000313|Proteomes:UP000189702}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. TM-1 {ECO:0000313|Proteomes:UP000189702};
RX PubMed=25893780; DOI=10.1038/nbt.3208;
RA Li F., Fan G., Lu C., Xiao G., Zou C., Kohel R.J., Ma Z., Shang H., Ma X.,
RA Wu J., Liang X., Huang G., Percy R.G., Liu K., Yang W., Chen W., Du X.,
RA Shi C., Yuan Y., Ye W., Liu X., Zhang X., Liu W., Wei H., Wei S., Huang G.,
RA Zhang X., Zhu S., Zhang H., Sun F., Wang X., Liang J., Wang J., He Q.,
RA Huang L., Wang J., Cui J., Song G., Wang K., Xu X., Yu J.Z., Zhu Y., Yu S.;
RT "Genome sequence of cultivated Upland cotton (Gossypium hirsutum TM-1)
RT provides insights into genome evolution.";
RL Nat. Biotechnol. 33:524-530(2015).
RN [2] {ECO:0000313|RefSeq:XP_016743022.1}
RP IDENTIFICATION.
RC TISSUE=Leaf {ECO:0000313|RefSeq:XP_016743022.1};
RG RefSeq;
RL Submitted (NOV-2023) to UniProtKB.
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DR RefSeq; XP_016743022.1; XM_016887533.1.
DR AlphaFoldDB; A0A1U8NVP6; -.
DR PaxDb; 3635-A0A1U8NVP6; -.
DR GeneID; 107952266; -.
DR KEGG; ghi:107952266; -.
DR OrthoDB; 1108911at2759; -.
DR Proteomes; UP000189702; Chromosome 8.
DR GO; GO:0003676; F:nucleic acid binding; IEA:InterPro.
DR GO; GO:0008270; F:zinc ion binding; IEA:InterPro.
DR Gene3D; 3.10.10.10; HIV Type 1 Reverse Transcriptase, subunit A, domain 1; 1.
DR Gene3D; 4.10.60.10; Zinc finger, CCHC-type; 1.
DR InterPro; IPR043502; DNA/RNA_pol_sf.
DR InterPro; IPR032567; LDOC1-rel.
DR InterPro; IPR001878; Znf_CCHC.
DR PANTHER; PTHR15503; LDOC1 RELATED; 1.
DR PANTHER; PTHR15503:SF43; REVERSE TRANSCRIPTASE RNASE H-LIKE DOMAIN-CONTAINING PROTEIN; 1.
DR Pfam; PF08284; RVP_2; 1.
DR SMART; SM00343; ZnF_C2HC; 1.
DR SUPFAM; SSF56672; DNA/RNA polymerases; 1.
DR PROSITE; PS50158; ZF_CCHC; 1.
PE 4: Predicted;
KW Coiled coil {ECO:0000256|SAM:Coils};
KW Metal-binding {ECO:0000256|PROSITE-ProRule:PRU00047};
KW Reference proteome {ECO:0000313|Proteomes:UP000189702};
KW Zinc {ECO:0000256|PROSITE-ProRule:PRU00047};
KW Zinc-finger {ECO:0000256|PROSITE-ProRule:PRU00047}.
FT DOMAIN 95..110
FT /note="CCHC-type"
FT /evidence="ECO:0000259|PROSITE:PS50158"
FT REGION 1..21
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COILED 64..91
FT /evidence="ECO:0000256|SAM:Coils"
SQ SEQUENCE 381 AA; 42909 MW; 3880555D1D26284E CRC64;
MSSNQAQDEF EEVESHAPAS VQQAMFGTSR KPMSRGQEEA NATFFEIMDE WFGEYLRNCC
GTILANRAKK AEELSNEKKQ AERKAQRVPD EEGACYRCGF LDHFLKDCPE QDNKEVEPNS
KLNALISRGR PLRYPVSASG GHSAAKDTTT KSKARAPART YAIRAREEAS AFDVITGTFS
LYDIPVVALI DPGLTHSYVC MKLVSSKELL VEFMEYMIKV SNLLGKHVLV DKKVIELRCE
NGEALRVEPD ESYVPSVVIF SMSAKKLLRK GCEAYLAYVL NTKESKLKVE PVPVVCEYPD
VFPEELLGLP RIREVEFSID LVPGTTPISI AQYQMAPMEL RELRSQLQEL TDKGFARPNS
LLWGAPDLCF ERCRVDSEYF T
//
