ID   A0A1U8P4X8_GOSHI        Unreviewed;       569 AA.
AC   A0A1U8P4X8;
DT   10-MAY-2017, integrated into UniProtKB/TrEMBL.
DT   10-MAY-2017, sequence version 1.
DT   27-MAR-2024, entry version 26.
DE   SubName: Full=Uncharacterized protein LOC107955072 {ECO:0000313|RefSeq:XP_016746272.1};
GN   Name=LOC107955072 {ECO:0000313|RefSeq:XP_016746272.1};
OS   Gossypium hirsutum (Upland cotton) (Gossypium mexicanum).
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC   rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium.
OX   NCBI_TaxID=3635 {ECO:0000313|Proteomes:UP000189702, ECO:0000313|RefSeq:XP_016746272.1};
RN   [1] {ECO:0000313|Proteomes:UP000189702}
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=cv. TM-1 {ECO:0000313|Proteomes:UP000189702};
RX   PubMed=25893780; DOI=10.1038/nbt.3208;
RA   Li F., Fan G., Lu C., Xiao G., Zou C., Kohel R.J., Ma Z., Shang H., Ma X.,
RA   Wu J., Liang X., Huang G., Percy R.G., Liu K., Yang W., Chen W., Du X.,
RA   Shi C., Yuan Y., Ye W., Liu X., Zhang X., Liu W., Wei H., Wei S., Huang G.,
RA   Zhang X., Zhu S., Zhang H., Sun F., Wang X., Liang J., Wang J., He Q.,
RA   Huang L., Wang J., Cui J., Song G., Wang K., Xu X., Yu J.Z., Zhu Y., Yu S.;
RT   "Genome sequence of cultivated Upland cotton (Gossypium hirsutum TM-1)
RT   provides insights into genome evolution.";
RL   Nat. Biotechnol. 33:524-530(2015).
RN   [2] {ECO:0000313|RefSeq:XP_016746272.1}
RP   IDENTIFICATION.
RC   TISSUE=Leaf {ECO:0000313|RefSeq:XP_016746272.1};
RG   RefSeq;
RL   Submitted (NOV-2023) to UniProtKB.
CC   -!- SIMILARITY: Belongs to the UFD1 family.
CC       {ECO:0000256|ARBA:ARBA00006043}.
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DR   RefSeq; XP_016746272.1; XM_016890783.1.
DR   AlphaFoldDB; A0A1U8P4X8; -.
DR   STRING; 3635.A0A1U8P4X8; -.
DR   PaxDb; 3635-A0A1U8P4X8; -.
DR   GeneID; 107955072; -.
DR   KEGG; ghi:107955072; -.
DR   OrthoDB; 1333844at2759; -.
DR   Proteomes; UP000189702; Chromosome 9.
DR   GO; GO:0034098; C:VCP-NPL4-UFD1 AAA ATPase complex; IBA:GO_Central.
DR   GO; GO:0031593; F:polyubiquitin modification-dependent protein binding; IBA:GO_Central.
DR   GO; GO:0071712; P:ER-associated misfolded protein catabolic process; IBA:GO_Central.
DR   GO; GO:0030433; P:ubiquitin-dependent ERAD pathway; IBA:GO_Central.
DR   CDD; cd20335; BRcat_RBR; 1.
DR   Gene3D; 2.60.120.380; -; 1.
DR   Gene3D; 3.10.330.10; -; 1.
DR   Gene3D; 2.40.40.50; Ubiquitin fusion degradation protein UFD1, N-terminal domain; 1.
DR   Gene3D; 3.30.40.10; Zinc/RING finger domain, C3HC4 (zinc finger); 2.
DR   InterPro; IPR049439; TRAFD1-XIAF1_Znf.
DR   InterPro; IPR004854; Ufd1-like.
DR   InterPro; IPR042299; Ufd1-like_Nn.
DR   InterPro; IPR013083; Znf_RING/FYVE/PHD.
DR   PANTHER; PTHR12555; UBIQUITIN FUSION DEGRADATON PROTEIN 1; 1.
DR   PANTHER; PTHR12555:SF13; UBIQUITIN RECOGNITION FACTOR IN ER-ASSOCIATED DEGRADATION PROTEIN 1; 1.
DR   Pfam; PF21366; TRAFD1-XIAF1_ZnF; 1.
DR   Pfam; PF03152; UFD1; 1.
DR   SUPFAM; SSF49599; TRAF domain-like; 1.
PE   3: Inferred from homology;
KW   Reference proteome {ECO:0000313|Proteomes:UP000189702};
KW   Ubl conjugation pathway {ECO:0000256|ARBA:ARBA00022786}.
FT   DOMAIN          532..561
FT                   /note="TRAFD1/XAF1 zinc finger"
FT                   /evidence="ECO:0000259|Pfam:PF21366"
FT   REGION          1..46
FT                   /note="Disordered"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ   SEQUENCE   569 AA;  63890 MW;  367CD646834C3CA7 CRC64;
     MDFELRRARE KLDKEQRERK ERAKLKLDRE RKAKEEAKKQ RDAIEAAQRS RRLDAIEAQL
     KAEQQMGESL LAGRGVVFYK ILEAVPFQGS GDKIKLPPSC FTELSDQGAF DKGPMYFQLS
     LVHQEGSSAT KDDDKENNRT THSGVLEFTA DEGSVASPPR VWSNLFPVDA PNIPLVEVRY
     VRLSKGTYAK LQPDGIGFSD LPNHKAILET SLRQHATLSQ DDVLTVKYGE LTYKLRVLEL
     KPSSSISVLE TDIEVDIVNP GVESERTDQY VLKPLAFGAS ESGLVEEGNY MYYKFSIDDD
     TWEKLVSDDV KIEVKIDAEA NGGDTDLYVS KHPLIFPNRH QHEWSSHDVG SKTLILSSND
     RNLGTGTYSI AVYGFKGTTK YQVSVHVQEN SKHKVGQQAT HSSSMEVDTV ECRNCKHFIP
     SRSIALHEAY CSRHNVVCPH AGCGIVLRIE ETKNHVHCDK CGQAFHLGEM EKHMKVFHEP
     LRCPCGVVLE KEDMVQHQTS DCPLRLITCR FCGDMVQAGS SAMDVRDRLR GLSEHESICG
     SRTAPCDSCG RSVMLKDMDI HQIAVHQKN
//