ID A0A1V8T411_9PEZI Unreviewed; 1492 AA.
AC A0A1V8T411;
DT 07-JUN-2017, integrated into UniProtKB/TrEMBL.
DT 07-JUN-2017, sequence version 1.
DT 24-JAN-2024, entry version 23.
DE RecName: Full=DNA-directed RNA polymerase subunit {ECO:0000256|RuleBase:RU004279};
DE EC=2.7.7.6 {ECO:0000256|RuleBase:RU004279};
GN ORFNames=B0A48_08632 {ECO:0000313|EMBL:OQO06044.1};
OS Rachicladosporium antarcticum.
OC Eukaryota; Fungi; Dikarya; Ascomycota; Pezizomycotina; Dothideomycetes;
OC Dothideomycetidae; Cladosporiales; Cladosporiaceae; Rachicladosporium.
OX NCBI_TaxID=1507870 {ECO:0000313|EMBL:OQO06044.1, ECO:0000313|Proteomes:UP000192596};
RN [1] {ECO:0000313|Proteomes:UP000192596}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=CCFEE 5527 {ECO:0000313|Proteomes:UP000192596};
RA Coleine C., Masonjones S., Stajich J.E.;
RT "Genomes of endolithic fungi from Antarctica.";
RL Submitted (MAR-2017) to the EMBL/GenBank/DDBJ databases.
CC -!- FUNCTION: DNA-dependent RNA polymerase catalyzes the transcription of
CC DNA into RNA using the four ribonucleoside triphosphates as substrates.
CC {ECO:0000256|RuleBase:RU004279}.
CC -!- CATALYTIC ACTIVITY:
CC Reaction=a ribonucleoside 5'-triphosphate + RNA(n) = diphosphate +
CC RNA(n+1); Xref=Rhea:RHEA:21248, Rhea:RHEA-COMP:14527, Rhea:RHEA-
CC COMP:17342, ChEBI:CHEBI:33019, ChEBI:CHEBI:61557, ChEBI:CHEBI:140395;
CC EC=2.7.7.6; Evidence={ECO:0000256|ARBA:ARBA00024550,
CC ECO:0000256|RuleBase:RU004279};
CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|ARBA:ARBA00004123}.
CC -!- SIMILARITY: Belongs to the RNA polymerase beta' chain family.
CC {ECO:0000256|RuleBase:RU004279}.
CC -!- CAUTION: The sequence shown here is derived from an EMBL/GenBank/DDBJ
CC whole genome shotgun (WGS) entry which is preliminary data.
CC {ECO:0000313|EMBL:OQO06044.1}.
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DR EMBL; NAJO01000017; OQO06044.1; -; Genomic_DNA.
DR STRING; 1507870.A0A1V8T411; -.
DR InParanoid; A0A1V8T411; -.
DR OrthoDB; 169836at2759; -.
DR Proteomes; UP000192596; Unassembled WGS sequence.
DR GO; GO:0000428; C:DNA-directed RNA polymerase complex; IEA:UniProtKB-KW.
DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
DR GO; GO:0003677; F:DNA binding; IEA:InterPro.
DR GO; GO:0003899; F:DNA-directed 5'-3' RNA polymerase activity; IEA:UniProtKB-EC.
DR GO; GO:0006351; P:DNA-templated transcription; IEA:InterPro.
DR CDD; cd02736; RNAP_III_Rpc1_C; 1.
DR CDD; cd02583; RNAP_III_RPC1_N; 1.
DR Gene3D; 1.10.132.30; -; 1.
DR Gene3D; 1.10.150.390; -; 1.
DR Gene3D; 2.40.40.20; -; 1.
DR Gene3D; 6.10.250.2940; -; 1.
DR Gene3D; 6.20.50.80; -; 1.
DR Gene3D; 3.30.1490.180; RNA polymerase ii; 1.
DR Gene3D; 4.10.860.120; RNA polymerase II, clamp domain; 1.
DR Gene3D; 1.10.274.100; RNA polymerase Rpb1, domain 3; 1.
DR InterPro; IPR045867; DNA-dir_RpoC_beta_prime.
DR InterPro; IPR000722; RNA_pol_asu.
DR InterPro; IPR006592; RNA_pol_N.
DR InterPro; IPR007080; RNA_pol_Rpb1_1.
DR InterPro; IPR007066; RNA_pol_Rpb1_3.
DR InterPro; IPR042102; RNA_pol_Rpb1_3_sf.
DR InterPro; IPR007083; RNA_pol_Rpb1_4.
DR InterPro; IPR007081; RNA_pol_Rpb1_5.
DR InterPro; IPR044893; RNA_pol_Rpb1_clamp_domain.
DR InterPro; IPR035698; RNAP_III_Rpc1_C.
DR InterPro; IPR035697; RNAP_III_RPC1_N.
DR InterPro; IPR038120; Rpb1_funnel_sf.
DR PANTHER; PTHR19376; DNA-DIRECTED RNA POLYMERASE; 1.
DR PANTHER; PTHR19376:SF32; DNA-DIRECTED RNA POLYMERASE III SUBUNIT RPC1; 1.
DR Pfam; PF04997; RNA_pol_Rpb1_1; 1.
DR Pfam; PF00623; RNA_pol_Rpb1_2; 1.
DR Pfam; PF04983; RNA_pol_Rpb1_3; 1.
DR Pfam; PF05000; RNA_pol_Rpb1_4; 1.
DR Pfam; PF04998; RNA_pol_Rpb1_5; 1.
DR SMART; SM00663; RPOLA_N; 1.
DR SUPFAM; SSF64484; beta and beta-prime subunits of DNA dependent RNA-polymerase; 1.
PE 3: Inferred from homology;
KW DNA-directed RNA polymerase {ECO:0000256|ARBA:ARBA00022478,
KW ECO:0000256|RuleBase:RU004279};
KW Nucleotidyltransferase {ECO:0000256|ARBA:ARBA00022695,
KW ECO:0000256|RuleBase:RU004279}; Nucleus {ECO:0000256|ARBA:ARBA00023242};
KW Reference proteome {ECO:0000313|Proteomes:UP000192596};
KW Transcription {ECO:0000256|ARBA:ARBA00023163,
KW ECO:0000256|RuleBase:RU004279};
KW Transferase {ECO:0000256|ARBA:ARBA00022679, ECO:0000256|RuleBase:RU004279}.
FT DOMAIN 266..573
FT /note="RNA polymerase N-terminal"
FT /evidence="ECO:0000259|SMART:SM00663"
FT REGION 46..66
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 1228..1261
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 1492 AA; 166164 MW; FFEAC6C3171E1710 CRC64;
MDNYDDNGKE QVLDRPPKRI KSIQFGMLSP QDMVAQSVVN IADRNPYDLD RTPGQPRKHT
VNGPLDQRLG TSAKSGICQT CHEGLKECSG HFGHVKLVLP VFHYGYFSKI IELLHCVCKE
CSKVLLPEKE KRKLLRRLRT PGMDGLRKSA VCKAIATDCR KVRVCPHCSA LNGQVKKVPG
HPIKIFHNKF TQYTSSTAKS KVKPKEMEKF EQSFTAAKEN NNEVDRLAKR AMDDLNPVRV
MNIFRKISAQ DVELFGMDPA SGGRPENMLW TFVPAPPVAI RPSVAQEAAS TEDDITNKLG
DILHVNSLIR AGLAQGQSIS KITEMWEYLQ VQVAMYINGG LPGLSKDSAY GKMMRGFEQR
LKGKQGRFRG NLSGKRVDFS GRTVISPDPN LSIEEVAVPT RVAVNMTYPE KVNAQNIDKL
KACIMRGSRH HPGANWVIKG ADGRRLALKM AASKSDLKRV EEKLVIGDIV ERHLEDGDIV
LFNRQPSLHK LSILAHRAKI RPWRTFRLNE CVCNPYNADF DGDEMNLHVP QTEEARAEAM
ELMGVKHNLA TPKNGTPIIA AIQDFITAAY LMSRKDKFFN RRQFEQCVSY MYNGMTAKDP
YTGKEYLIHI PPPAIIRPQQ QWTGKQVWSM LIKPHPDYPV NINLEAKCKQ YTAPRTPGTI
PDMVENDAYL VIRNSEVMCG VMDKATVGDG KKDSVFYVIW RDFGPEYAAE AMNRLSKLSA
RWLGEQGFSI GINDVYPSEQ LRLRKAQLVG TAYAKCVKLI EQFKRGELQR DPGCDEEMTM
ENQMSGILSK VRQECGDACF AELSVFNAPL TMATCGSKGS LINVSQMVAV VGQQIIGGKR
VLDGFQDRTL PHFAKASRDP PAKGFVLNSF FSGLNPTEFI FHAMSGREGL VDTAVKTAET
GYMSRRLMKS LEDLSAQYDN TVRTSNGSVV QMKFGDDGLD PLDMEGSAKP VNFERTYAHA
LSSTWDNSER GLTQKEVKKI VKTRIEAERK GLDRICEQDQ SILPYEYEED KPERTDQLES
IRSFLTTVSD FIADKSAKIA STQRRNPADT SHIFKLSRTA LDRFLHLCFQ KFEKSKVEPH
HAVGAVGAHS IGEPGTQMTL KTFHFAGVAG MSITQGVPRI KEIINASKVI STPVISCSLD
SPYEAIAARM ASALIQKTYM RDIVAYIEDC WGQDGGWINM RVDWTAVRNL GLRISLEHIT
TAIEGTKGMK ALGVTALHHG NSHIRVYIDS PDHTSSTKPR RKPTSRPTAL SKARDLAGEP
PLAETGSDLF LQIQQLKRRL PGVVISGYPD AHRAIMKRDD RPDATGREPI QVLVEGYGFR
HCLTTSGING LSTYTNHIPE TLSVLGIEAA RSTIIREISQ VMGGMDIDPR HMQLLADVMT
FKGEVLGITR FGLAKMRESV LQLASFEKTA EHLYEAGVKG KEDRIEGVSE CIIMGQTMGI
GTGGVKVVRP VKIAEGVGQR AMKGETFTDG WKSVAKAREA RMKERRERIL GA
//
