ID A0A1W0W538_SORBI Unreviewed; 657 AA.
AC A0A1W0W538;
DT 07-JUN-2017, integrated into UniProtKB/TrEMBL.
DT 07-JUN-2017, sequence version 1.
DT 27-MAR-2024, entry version 25.
DE RecName: Full=Pentacotripeptide-repeat region of PRORP domain-containing protein {ECO:0008006|Google:ProtNLM};
GN ORFNames=SORBI_3002G200500 {ECO:0000313|EMBL:OQU89482.1};
OS Sorghum bicolor (Sorghum) (Sorghum vulgare).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; PACMAD clade;
OC Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum.
OX NCBI_TaxID=4558 {ECO:0000313|EMBL:OQU89482.1, ECO:0000313|Proteomes:UP000000768};
RN [1] {ECO:0000313|EMBL:OQU89482.1, ECO:0000313|Proteomes:UP000000768}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. BTx623 {ECO:0000313|Proteomes:UP000000768};
RX PubMed=19189423; DOI=10.1038/nature07723;
RA Paterson A.H., Bowers J.E., Bruggmann R., Dubchak I., Grimwood J.,
RA Gundlach H., Haberer G., Hellsten U., Mitros T., Poliakov A., Schmutz J.,
RA Spannagl M., Tang H., Wang X., Wicker T., Bharti A.K., Chapman J.,
RA Feltus F.A., Gowik U., Grigoriev I.V., Lyons E., Maher C.A., Martis M.,
RA Narechania A., Otillar R.P., Penning B.W., Salamov A.A., Wang Y., Zhang L.,
RA Carpita N.C., Freeling M., Gingle A.R., Hash C.T., Keller B., Klein P.,
RA Kresovich S., McCann M.C., Ming R., Peterson D.G., Mehboob-ur-Rahman,
RA Ware D., Westhoff P., Mayer K.F., Messing J., Rokhsar D.S.;
RT "The Sorghum bicolor genome and the diversification of grasses.";
RL Nature 457:551-556(2009).
RN [2] {ECO:0000313|EMBL:OQU89482.1}
RP NUCLEOTIDE SEQUENCE.
RA Paterson A., Mullet J., Bowers J., Bruggmann R., Dubchak I., Grimwood J.,
RA Gundlach H., Haberer G., Hellsten U., Mitros T., Poliakov A., Schmutz J.,
RA Spannagl M., Tang H., Wang X., Wicker T., Bharti A., Chapman J., Feltus F.,
RA Gowik U., Grigoriev I., Lyons E., Maher C., Martis M., Narechania A.,
RA Otillar R., Penning B., Salamov A., Wang Y., Zhang L., Carpita N.,
RA Freeling M., Gingle A., Hash C., Keller B., Klein P., Kresovich S.,
RA Mccann M., Ming R., Peterson D., Rahman M., Ware D., Westhoff P., Mayer K.,
RA Messing J., Sims D., Jenkins J., Shu S., Rokhsar D.;
RT "WGS assembly of Sorghum bicolor.";
RL Submitted (FEB-2017) to the EMBL/GenBank/DDBJ databases.
RN [3] {ECO:0000313|Proteomes:UP000000768}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. BTx623 {ECO:0000313|Proteomes:UP000000768};
RX PubMed=29161754; DOI=10.1111/tpj.13781;
RA McCormick R.F., Truong S.K., Sreedasyam A., Jenkins J., Shu S., Sims D.,
RA Kennedy M., Amirebrahimi M., Weers B.D., McKinley B., Mattison A.,
RA Morishige D.T., Grimwood J., Schmutz J., Mullet J.E.;
RT "The Sorghum bicolor reference genome: improved assembly, gene annotations,
RT a transcriptome atlas, and signatures of genome organization.";
RL Plant J. 93:338-354(2018).
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DR EMBL; CM000761; OQU89482.1; -; Genomic_DNA.
DR EMBL; CM000761; OQU89483.1; -; Genomic_DNA.
DR EMBL; CM000761; OQU89484.1; -; Genomic_DNA.
DR EMBL; CM000761; OQU89485.1; -; Genomic_DNA.
DR EMBL; CM000761; OQU89486.1; -; Genomic_DNA.
DR AlphaFoldDB; A0A1W0W538; -.
DR STRING; 4558.A0A1W0W538; -.
DR EnsemblPlants; OQU89482; OQU89482; SORBI_3002G200500.
DR EnsemblPlants; OQU89483; OQU89483; SORBI_3002G200500.
DR EnsemblPlants; OQU89484; OQU89484; SORBI_3002G200500.
DR EnsemblPlants; OQU89485; OQU89485; SORBI_3002G200500.
DR EnsemblPlants; OQU89486; OQU89486; SORBI_3002G200500.
DR Gramene; OQU89482; OQU89482; SORBI_3002G200500.
DR Gramene; OQU89483; OQU89483; SORBI_3002G200500.
DR Gramene; OQU89484; OQU89484; SORBI_3002G200500.
DR Gramene; OQU89485; OQU89485; SORBI_3002G200500.
DR Gramene; OQU89486; OQU89486; SORBI_3002G200500.
DR eggNOG; KOG4197; Eukaryota.
DR InParanoid; A0A1W0W538; -.
DR OMA; AWTTIID; -.
DR Proteomes; UP000000768; Chromosome 2.
DR GO; GO:0009507; C:chloroplast; IEA:EnsemblPlants.
DR GO; GO:0043231; C:intracellular membrane-bounded organelle; IBA:GO_Central.
DR GO; GO:0005739; C:mitochondrion; IEA:EnsemblPlants.
DR GO; GO:0003723; F:RNA binding; IBA:GO_Central.
DR GO; GO:0080156; P:mitochondrial mRNA modification; IEA:EnsemblPlants.
DR GO; GO:0009451; P:RNA modification; IBA:GO_Central.
DR Gene3D; 1.25.40.10; Tetratricopeptide repeat domain; 4.
DR InterPro; IPR002885; Pentatricopeptide_rpt.
DR InterPro; IPR011990; TPR-like_helical_dom_sf.
DR NCBIfam; TIGR00756; PPR; 3.
DR PANTHER; PTHR47928:SF190; OS04G0110500 PROTEIN; 1.
DR PANTHER; PTHR47928; REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED; 1.
DR Pfam; PF01535; PPR; 5.
DR Pfam; PF13041; PPR_2; 3.
DR PROSITE; PS51375; PPR; 4.
DR PROSITE; PS51257; PROKAR_LIPOPROTEIN; 1.
PE 4: Predicted;
KW Reference proteome {ECO:0000313|Proteomes:UP000000768};
KW Repeat {ECO:0000256|ARBA:ARBA00022737};
KW Transit peptide {ECO:0000256|ARBA:ARBA00022946}.
FT REPEAT 80..114
FT /note="PPR"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT REPEAT 279..313
FT /note="PPR"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT REPEAT 379..413
FT /note="PPR"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT REPEAT 480..514
FT /note="PPR"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
SQ SEQUENCE 657 AA; 72468 MW; E34241A64033C2DF CRC64;
MFRDMVRGSS CEPNSFTYSG AFSACAAGAE LGVGRAVHGM VLRRDPEYDV FVGTSIVNMY
VKCGQMGAAM NEFWRMPIRN VVSWTTAIAG FVQEEDPVSA MLLLTEMLRS GVAINKYTAT
SILLACSQMS MIREANQVHG MIMKTELYLD HVVKEALIST YANVGAVQLC EKVFQEVGTV
SNRSIWSAFI SGVSRHSLQR SIQLLRRMLC QGLRPNDKCH ASVFSSVDSS ELGRQLHSLV
IRDGFIHAVL VASALSTMYS RCNDLKDSYK VFEEMQERDE VSWTSMVAGF ATHGHSAEAF
QVLRNMIDEG FTPDDVSLSA ILSACNVPEC LLKGKEVHGH VLRAYGGTTS INHCLVSMYS
KCKDVQTARR LFDATPCKDQ IMLSSMISGY ATNGYSEEAI SLFQLMLAAG FHIDRFLCSS
IISICADMAR LFYGKLLHGY AAKVGILSDL SVSSSLVKLY SKSGNLDDSR KVFDEIDVPD
LVTWTAIVDG YAQHGSSQDA LAMFDLMIRC GVKPDTVILV SVLSACGRNG LVEEGFKHFN
SMRTVYGVEP VLHHYCCMVD LLGRSGRLVE AKSFIESMPV KPDSMVWSTL LAACRVHDDV
VLGRFVENKI REESCDSGCF ATMSNIRANS GDWEGVMEIR KSVKDVKKEP GWSLLEE
//
