ID A0A1W1I1W3_9BACT Unreviewed; 508 AA.
AC A0A1W1I1W3;
DT 07-JUN-2017, integrated into UniProtKB/TrEMBL.
DT 07-JUN-2017, sequence version 1.
DT 27-MAR-2024, entry version 24.
DE SubName: Full=Nif-specific regulatory protein {ECO:0000313|EMBL:SLM46985.1};
GN Name=nifA {ECO:0000313|EMBL:SLM46985.1};
GN ORFNames=NSJP_0813 {ECO:0000313|EMBL:SLM46985.1};
OS Nitrospira japonica.
OC Bacteria; Nitrospirota; Nitrospiria; Nitrospirales; Nitrospiraceae;
OC Nitrospira.
OX NCBI_TaxID=1325564 {ECO:0000313|EMBL:SLM46985.1, ECO:0000313|Proteomes:UP000192042};
RN [1] {ECO:0000313|EMBL:SLM46985.1, ECO:0000313|Proteomes:UP000192042}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=Genome sequencing of Nitrospira japonica strain NJ11
RC {ECO:0000313|EMBL:SLM46985.1};
RA Afonso C.L., Miller P.J., Scott M.A., Spackman E., Goraichik I.,
RA Dimitrov K.M., Suarez D.L., Swayne D.E.;
RL Submitted (MAR-2017) to the EMBL/GenBank/DDBJ databases.
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DR EMBL; LT828648; SLM46985.1; -; Genomic_DNA.
DR AlphaFoldDB; A0A1W1I1W3; -.
DR STRING; 1325564.NSJP_0813; -.
DR KEGG; nja:NSJP_0813; -.
DR OrthoDB; 9804019at2; -.
DR Proteomes; UP000192042; Chromosome i.
DR GO; GO:0005524; F:ATP binding; IEA:UniProtKB-KW.
DR GO; GO:0016887; F:ATP hydrolysis activity; IEA:InterPro.
DR GO; GO:0043565; F:sequence-specific DNA binding; IEA:InterPro.
DR GO; GO:0006355; P:regulation of DNA-templated transcription; IEA:InterPro.
DR CDD; cd00009; AAA; 1.
DR Gene3D; 1.10.8.60; -; 1.
DR Gene3D; 3.30.450.40; -; 1.
DR Gene3D; 1.10.10.60; Homeodomain-like; 1.
DR Gene3D; 3.40.50.300; P-loop containing nucleotide triphosphate hydrolases; 1.
DR InterPro; IPR003593; AAA+_ATPase.
DR InterPro; IPR003018; GAF.
DR InterPro; IPR029016; GAF-like_dom_sf.
DR InterPro; IPR009057; Homeobox-like_sf.
DR InterPro; IPR002197; HTH_Fis.
DR InterPro; IPR027417; P-loop_NTPase.
DR InterPro; IPR002078; Sigma_54_int.
DR InterPro; IPR025662; Sigma_54_int_dom_ATP-bd_1.
DR InterPro; IPR025943; Sigma_54_int_dom_ATP-bd_2.
DR InterPro; IPR025944; Sigma_54_int_dom_CS.
DR PANTHER; PTHR32071; TRANSCRIPTIONAL REGULATORY PROTEIN; 1.
DR PANTHER; PTHR32071:SF117; TRANSCRIPTIONAL REGULATORY PROTEIN; 1.
DR Pfam; PF01590; GAF; 1.
DR Pfam; PF02954; HTH_8; 1.
DR Pfam; PF00158; Sigma54_activat; 1.
DR SMART; SM00382; AAA; 1.
DR SMART; SM00065; GAF; 1.
DR SUPFAM; SSF55781; GAF domain-like; 1.
DR SUPFAM; SSF46689; Homeodomain-like; 1.
DR SUPFAM; SSF52540; P-loop containing nucleoside triphosphate hydrolases; 1.
DR PROSITE; PS00675; SIGMA54_INTERACT_1; 1.
DR PROSITE; PS00676; SIGMA54_INTERACT_2; 1.
DR PROSITE; PS00688; SIGMA54_INTERACT_3; 1.
DR PROSITE; PS50045; SIGMA54_INTERACT_4; 1.
PE 4: Predicted;
KW ATP-binding {ECO:0000256|ARBA:ARBA00022840};
KW DNA-binding {ECO:0000256|ARBA:ARBA00023125};
KW Nucleotide-binding {ECO:0000256|ARBA:ARBA00022741};
KW Reference proteome {ECO:0000313|Proteomes:UP000192042};
KW Transcription {ECO:0000256|ARBA:ARBA00023163};
KW Transcription regulation {ECO:0000256|ARBA:ARBA00023015}.
FT DOMAIN 198..427
FT /note="Sigma-54 factor interaction"
FT /evidence="ECO:0000259|PROSITE:PS50045"
SQ SEQUENCE 508 AA; 56996 MW; 37A02EE897AB63BA CRC64;
MRNDDESYRA LLAVTNVLNS QRDTDSLWRA ITEQIRKVLP WERAGVTLYN SDSDSFRFYA
VETTLPHREL PRDAVIPKVG SAVGWVYENR TIHVRPDLRR QRLFLEDEYY VREGLGRMIN
SPLMVGSDCI GTLNIGSVEC GDPDPTDLEF LQLVATQIAY AIGHVQAYEQ IDRLRHQLAR
ENEYLVEELK LTHNFGAMVG LSAAFRTALT QAEAVGPTGT TVLVTGETGT GKELMARAIH
ELSARRDKPF VRVNCAALPM GLVESELFGH ERGAFTGADQ RRAGRFELAN GGTLFLDEIG
EMPLEAQAKL LRVLEDGLVD RVGGTRPIPV DVRIVAATNS DLVSAVNEGR FRQDLYYRLH
VFPIALPPLR ERREDIPLLA RHFLEAYRAK LKRPMLELSE ESMSRLTNYS WPGNVRELQN
VIERAVILAQ SPVLTIEPQA LVGGNAVAES TSNLIDVERR HIQHVLESVH WRIYGTYGAA
AQLGMNPSTL RSRMKKLGLK RPVNFPVV
//
