ID   A0A1W2CN38_9FLAO        Unreviewed;       337 AA.
AC   A0A1W2CN38;
DT   07-JUN-2017, integrated into UniProtKB/TrEMBL.
DT   07-JUN-2017, sequence version 1.
DT   24-JAN-2024, entry version 21.
DE   RecName: Full=RNA ligase (ATP) {ECO:0000256|ARBA:ARBA00012724};
DE            EC=6.5.1.3 {ECO:0000256|ARBA:ARBA00012724};
GN   ORFNames=SAMN02787074_3455 {ECO:0000313|EMBL:SMC86633.1};
OS   Chryseobacterium sp. YR221.
OC   Bacteria; Bacteroidota; Flavobacteriia; Flavobacteriales; Weeksellaceae;
OC   Chryseobacterium group; Chryseobacterium.
OX   NCBI_TaxID=1500293 {ECO:0000313|EMBL:SMC86633.1, ECO:0000313|Proteomes:UP000192341};
RN   [1] {ECO:0000313|EMBL:SMC86633.1, ECO:0000313|Proteomes:UP000192341}
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=YR221 {ECO:0000313|EMBL:SMC86633.1,
RC   ECO:0000313|Proteomes:UP000192341};
RA   Afonso C.L., Miller P.J., Scott M.A., Spackman E., Goraichik I.,
RA   Dimitrov K.M., Suarez D.L., Swayne D.E.;
RL   Submitted (APR-2017) to the EMBL/GenBank/DDBJ databases.
CC   -!- CATALYTIC ACTIVITY:
CC       Reaction=ATP + (ribonucleotide)n-3'-hydroxyl + 5'-phospho-
CC         (ribonucleotide)m = (ribonucleotide)n+m + AMP + diphosphate.;
CC         EC=6.5.1.3; Evidence={ECO:0000256|ARBA:ARBA00034038};
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DR   EMBL; FWXM01000005; SMC86633.1; -; Genomic_DNA.
DR   RefSeq; WP_052188620.1; NZ_FWXM01000005.1.
DR   AlphaFoldDB; A0A1W2CN38; -.
DR   STRING; 1500293.SAMN02787074_3455; -.
DR   Proteomes; UP000192341; Unassembled WGS sequence.
DR   GO; GO:0005524; F:ATP binding; IEA:UniProtKB-KW.
DR   GO; GO:0003972; F:RNA ligase (ATP) activity; IEA:UniProtKB-EC.
DR   Gene3D; 3.30.1490.70; -; 1.
DR   Gene3D; 3.30.470.30; DNA ligase/mRNA capping enzyme; 1.
DR   Gene3D; 1.10.10.1810; RNA ligase; 1.
DR   InterPro; IPR012647; RNA_lig_RNL2.
DR   InterPro; IPR021122; RNA_ligase_dom_REL/Rnl2.
DR   InterPro; IPR041948; Rnl1/2_C_sf.
DR   InterPro; IPR040609; Rnl2_C.
DR   NCBIfam; TIGR02307; RNA_lig_RNL2; 1.
DR   Pfam; PF09414; RNA_ligase; 1.
DR   Pfam; PF18043; T4_Rnl2_C; 1.
DR   SUPFAM; SSF56091; DNA ligase/mRNA capping enzyme, catalytic domain; 1.
PE   4: Predicted;
KW   ATP-binding {ECO:0000256|ARBA:ARBA00022840};
KW   Ligase {ECO:0000256|ARBA:ARBA00022598, ECO:0000313|EMBL:SMC86633.1};
KW   Nucleotide-binding {ECO:0000256|ARBA:ARBA00022741}.
FT   DOMAIN          31..221
FT                   /note="RNA ligase"
FT                   /evidence="ECO:0000259|Pfam:PF09414"
FT   DOMAIN          248..322
FT                   /note="RNA ligase 2 C-terminal"
FT                   /evidence="ECO:0000259|Pfam:PF18043"
SQ   SEQUENCE   337 AA;  39134 MW;  8D5383E749EA45A5 CRC64;
     MIFKTYNSIE NAYQARVIEQ IRMQGFGDEV FIVQEKVHGA NFSFFTDGKE IKIAKRTAFI
     EKDEKFFNAH QILERYRKNV IKVFQKVKTI DPNVETIVIY GELFGGGYEH KDVEPVKGAV
     KVQKGIEYAP YNEFYAFDIK LNGVTYLDTE MINSIFEETG FFYAKTLFQG SLEEALRFPN
     VFNSKIPTWL GLPEMNNMCE GTIVKTLKTK YFGNGARVIL KNKNEKWIEK SKMVKKQAKT
     VQKQIHFSET AQNIWEEIQR YATVNRLNNV VSKIGEFEPK IIGKVIGLFA QDILEDFEKD
     FPAVFTTIEK EEQKRINKKL NALVIDFIKE ELMTVKV
//