ID A0A1W2CZT2_9SPHN Unreviewed; 423 AA.
AC A0A1W2CZT2;
DT 07-JUN-2017, integrated into UniProtKB/TrEMBL.
DT 07-JUN-2017, sequence version 1.
DT 27-MAR-2024, entry version 23.
DE SubName: Full=Site-specific recombinase XerD {ECO:0000313|EMBL:SMC90711.1};
GN ORFNames=SAMN06272759_1114 {ECO:0000313|EMBL:SMC90711.1};
OS Novosphingobium sp. B1.
OC Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales;
OC Sphingomonadaceae; Novosphingobium.
OX NCBI_TaxID=1938756 {ECO:0000313|EMBL:SMC90711.1, ECO:0000313|Proteomes:UP000192500};
RN [1] {ECO:0000313|Proteomes:UP000192500}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=B1 {ECO:0000313|Proteomes:UP000192500};
RA Varghese N., Submissions S.;
RL Submitted (APR-2017) to the EMBL/GenBank/DDBJ databases.
CC -!- SIMILARITY: Belongs to the 'phage' integrase family.
CC {ECO:0000256|ARBA:ARBA00008857}.
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DR EMBL; FWXL01000011; SMC90711.1; -; Genomic_DNA.
DR AlphaFoldDB; A0A1W2CZT2; -.
DR STRING; 1938756.SAMN06272759_1114; -.
DR OrthoDB; 7615137at2; -.
DR Proteomes; UP000192500; Unassembled WGS sequence.
DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule.
DR GO; GO:0015074; P:DNA integration; IEA:UniProtKB-KW.
DR GO; GO:0006310; P:DNA recombination; IEA:UniProtKB-KW.
DR GO; GO:0075713; P:establishment of integrated proviral latency; IEA:UniProtKB-KW.
DR GO; GO:0046718; P:viral entry into host cell; IEA:UniProtKB-KW.
DR GO; GO:0044826; P:viral genome integration into host DNA; IEA:UniProtKB-KW.
DR CDD; cd00801; INT_P4_C; 1.
DR Gene3D; 1.10.150.130; -; 1.
DR Gene3D; 3.30.160.390; Integrase, DNA-binding domain; 1.
DR Gene3D; 1.10.443.10; Intergrase catalytic core; 1.
DR InterPro; IPR044068; CB.
DR InterPro; IPR011010; DNA_brk_join_enz.
DR InterPro; IPR013762; Integrase-like_cat_sf.
DR InterPro; IPR002104; Integrase_catalytic.
DR InterPro; IPR038488; Integrase_DNA-bd_sf.
DR InterPro; IPR025166; Integrase_DNA_bind_dom.
DR InterPro; IPR010998; Integrase_recombinase_N.
DR PANTHER; PTHR30629; PROPHAGE INTEGRASE; 1.
DR PANTHER; PTHR30629:SF2; PROPHAGE INTEGRASE INTS-RELATED; 1.
DR Pfam; PF13356; Arm-DNA-bind_3; 1.
DR Pfam; PF00589; Phage_integrase; 1.
DR SUPFAM; SSF56349; DNA breaking-rejoining enzymes; 1.
DR PROSITE; PS51900; CB; 1.
DR PROSITE; PS51898; TYR_RECOMBINASE; 1.
PE 3: Inferred from homology;
KW DNA integration {ECO:0000256|ARBA:ARBA00022908};
KW DNA recombination {ECO:0000256|ARBA:ARBA00023172};
KW DNA-binding {ECO:0000256|ARBA:ARBA00023125, ECO:0000256|PROSITE-
KW ProRule:PRU01248};
KW Viral genome integration {ECO:0000256|ARBA:ARBA00023195};
KW Virus entry into host cell {ECO:0000256|ARBA:ARBA00023296}.
FT DOMAIN 104..187
FT /note="Core-binding (CB)"
FT /evidence="ECO:0000259|PROSITE:PS51900"
FT DOMAIN 209..403
FT /note="Tyr recombinase"
FT /evidence="ECO:0000259|PROSITE:PS51898"
SQ SEQUENCE 423 AA; 46807 MW; D949A3108B173007 CRC64;
MANKVGLTDA KIAGLKAPAA GQIELADGIV PGLRLRMGAS GIKTYILRKR VQGKWLNVTI
GRHGQSFTLA HARKKARDLL VDVEQGKSIA RKPGAKRKGS KGVGTVAELY ETYLSQQIEG
KKRSAREFDR VFRKYIEPEL GDRLADSITR GDVSRFVEKI AFERGKETLT MARIVYRHLS
TFYTWALTRL EHMPANPCRD AWRPKRNEPR DRVLSDRELA ALWQSAVEDG YPFGHLVQML
VLTAQRRGEV LDAACDEFDF KAKVWTVPGD RAKNGKANVV PLSAQALAVV TEVFMAAGID
PDDAHKQSQI LLASKVTSTN SVSGLSKAWK RIRASVDEKL GYEAGHFTMH DIRRTVATGL
QRLGIPLVVS EAVLNHQSGS AMAGVAGVYH RHQYTNEKRE ALALWGKEVM QIVAKYPAEA
KSG
//
