GenomeNet

Database: UniProt
Entry: A0A1X6NUD9_PORUM
LinkDB: A0A1X6NUD9_PORUM
Original site: A0A1X6NUD9_PORUM 
ID   A0A1X6NUD9_PORUM        Unreviewed;       173 AA.
AC   A0A1X6NUD9;
DT   05-JUL-2017, integrated into UniProtKB/TrEMBL.
DT   05-JUL-2017, sequence version 1.
DT   24-JAN-2024, entry version 22.
DE   RecName: Full=Small nuclear ribonucleoprotein Sm D3 {ECO:0000256|RuleBase:RU365050};
DE            Short=Sm-D3 {ECO:0000256|RuleBase:RU365050};
DE   AltName: Full=snRNP core protein D3 {ECO:0000256|RuleBase:RU365050};
GN   ORFNames=BU14_0459s0006 {ECO:0000313|EMBL:OSX72185.1};
OS   Porphyra umbilicalis (Purple laver) (Red alga).
OC   Eukaryota; Rhodophyta; Bangiophyceae; Bangiales; Bangiaceae; Porphyra.
OX   NCBI_TaxID=2786 {ECO:0000313|EMBL:OSX72185.1, ECO:0000313|Proteomes:UP000218209};
RN   [1] {ECO:0000313|EMBL:OSX72185.1, ECO:0000313|Proteomes:UP000218209}
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=4086291 {ECO:0000313|EMBL:OSX72185.1};
RA   Brawley S.H., Blouin N.A., Ficko-Blean E., Wheeler G.L., Lohr M.,
RA   Goodson H.V., Jenkins J.W., Blaby-Haas C.E., Helliwell K.E., Chan C.,
RA   Marriage T., Bhattacharya D., Klein A.S., Badis Y., Brodie J., Cao Y.,
RA   Collen J., Dittami S.M., Gachon C.M., Green B.R., Karpowicz S., Kim J.W.,
RA   Kudahl U., Lin S., Michel G., Mittag M., Olson B.J., Pangilinan J.,
RA   Peng Y., Qiu H., Shu S., Singer J.T., Smith A.G., Sprecher B.N., Wagner V.,
RA   Wang W., Wang Z.-Y., Yan J., Yarish C., Zoeuner-Riek S., Zhuang Y., Zou Y.,
RA   Lindquist E.A., Grimwood J., Barry K., Rokhsar D.S., Schmutz J.,
RA   Stiller J.W., Grossman A.R., Prochnik S.E.;
RT   "WGS assembly of Porphyra umbilicalis.";
RL   Submitted (MAR-2017) to the EMBL/GenBank/DDBJ databases.
CC   -!- SUBCELLULAR LOCATION: Cytoplasm, cytosol
CC       {ECO:0000256|ARBA:ARBA00004514}. Nucleus
CC       {ECO:0000256|RuleBase:RU365050}.
CC   -!- SIMILARITY: Belongs to the snRNP core protein family.
CC       {ECO:0000256|ARBA:ARBA00008146, ECO:0000256|RuleBase:RU365050}.
CC   ---------------------------------------------------------------------------
CC   Copyrighted by the UniProt Consortium, see https://www.uniprot.org/terms
CC   Distributed under the Creative Commons Attribution (CC BY 4.0) License
CC   ---------------------------------------------------------------------------
DR   EMBL; KV919078; OSX72185.1; -; Genomic_DNA.
DR   AlphaFoldDB; A0A1X6NUD9; -.
DR   OrthoDB; 5474715at2759; -.
DR   Proteomes; UP000218209; Unassembled WGS sequence.
DR   GO; GO:0005829; C:cytosol; IEA:UniProtKB-SubCell.
DR   GO; GO:0005681; C:spliceosomal complex; IEA:InterPro.
DR   GO; GO:0003723; F:RNA binding; IEA:InterPro.
DR   GO; GO:0000387; P:spliceosomal snRNP assembly; IEA:UniProtKB-UniRule.
DR   CDD; cd01721; Sm_D3; 1.
DR   Gene3D; 2.30.30.100; -; 1.
DR   InterPro; IPR027141; LSm4/Sm_D1/D3.
DR   InterPro; IPR010920; LSM_dom_sf.
DR   InterPro; IPR047575; Sm.
DR   InterPro; IPR001163; Sm_dom_euk/arc.
DR   InterPro; IPR034099; SmD3.
DR   PANTHER; PTHR23338; SMALL NUCLEAR RIBONUCLEOPROTEIN SM; 1.
DR   PANTHER; PTHR23338:SF17; SMALL NUCLEAR RIBONUCLEOPROTEIN SM D3; 1.
DR   Pfam; PF01423; LSM; 1.
DR   SMART; SM00651; Sm; 1.
DR   SUPFAM; SSF50182; Sm-like ribonucleoproteins; 1.
DR   PROSITE; PS52002; SM; 1.
PE   3: Inferred from homology;
KW   mRNA processing {ECO:0000256|RuleBase:RU365050};
KW   mRNA splicing {ECO:0000256|RuleBase:RU365050};
KW   Nucleus {ECO:0000256|ARBA:ARBA00023242, ECO:0000256|RuleBase:RU365050};
KW   Reference proteome {ECO:0000313|Proteomes:UP000218209};
KW   Ribonucleoprotein {ECO:0000256|RuleBase:RU365050}.
FT   DOMAIN          5..77
FT                   /note="Sm"
FT                   /evidence="ECO:0000259|PROSITE:PS52002"
FT   REGION          87..108
FT                   /note="Disordered"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   COMPBIAS        91..108
FT                   /note="Basic and acidic residues"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ   SEQUENCE   173 AA;  18943 MW;  8FF55DCF046FFAB5 CRC64;
     MSIGIPIMLL HEALPHTVTV ETRSGDTYRG RLTAAEDCMN VQLMDVSLTR RDGRVAALSH
     VFIRGSKIRF VIVPDVLASA PMFKPAKTGG GGGEGRRRRS GGWPWEGRRW DGGAREGTRL
     TGEGPGAPVW TGVTVFARGA AALTWRRCPL LVVFCMWVAC CPPQRLLREA WLC
//
DBGET integrated database retrieval system