ID A0A1X6NUD9_PORUM Unreviewed; 173 AA.
AC A0A1X6NUD9;
DT 05-JUL-2017, integrated into UniProtKB/TrEMBL.
DT 05-JUL-2017, sequence version 1.
DT 24-JAN-2024, entry version 22.
DE RecName: Full=Small nuclear ribonucleoprotein Sm D3 {ECO:0000256|RuleBase:RU365050};
DE Short=Sm-D3 {ECO:0000256|RuleBase:RU365050};
DE AltName: Full=snRNP core protein D3 {ECO:0000256|RuleBase:RU365050};
GN ORFNames=BU14_0459s0006 {ECO:0000313|EMBL:OSX72185.1};
OS Porphyra umbilicalis (Purple laver) (Red alga).
OC Eukaryota; Rhodophyta; Bangiophyceae; Bangiales; Bangiaceae; Porphyra.
OX NCBI_TaxID=2786 {ECO:0000313|EMBL:OSX72185.1, ECO:0000313|Proteomes:UP000218209};
RN [1] {ECO:0000313|EMBL:OSX72185.1, ECO:0000313|Proteomes:UP000218209}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=4086291 {ECO:0000313|EMBL:OSX72185.1};
RA Brawley S.H., Blouin N.A., Ficko-Blean E., Wheeler G.L., Lohr M.,
RA Goodson H.V., Jenkins J.W., Blaby-Haas C.E., Helliwell K.E., Chan C.,
RA Marriage T., Bhattacharya D., Klein A.S., Badis Y., Brodie J., Cao Y.,
RA Collen J., Dittami S.M., Gachon C.M., Green B.R., Karpowicz S., Kim J.W.,
RA Kudahl U., Lin S., Michel G., Mittag M., Olson B.J., Pangilinan J.,
RA Peng Y., Qiu H., Shu S., Singer J.T., Smith A.G., Sprecher B.N., Wagner V.,
RA Wang W., Wang Z.-Y., Yan J., Yarish C., Zoeuner-Riek S., Zhuang Y., Zou Y.,
RA Lindquist E.A., Grimwood J., Barry K., Rokhsar D.S., Schmutz J.,
RA Stiller J.W., Grossman A.R., Prochnik S.E.;
RT "WGS assembly of Porphyra umbilicalis.";
RL Submitted (MAR-2017) to the EMBL/GenBank/DDBJ databases.
CC -!- SUBCELLULAR LOCATION: Cytoplasm, cytosol
CC {ECO:0000256|ARBA:ARBA00004514}. Nucleus
CC {ECO:0000256|RuleBase:RU365050}.
CC -!- SIMILARITY: Belongs to the snRNP core protein family.
CC {ECO:0000256|ARBA:ARBA00008146, ECO:0000256|RuleBase:RU365050}.
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DR EMBL; KV919078; OSX72185.1; -; Genomic_DNA.
DR AlphaFoldDB; A0A1X6NUD9; -.
DR OrthoDB; 5474715at2759; -.
DR Proteomes; UP000218209; Unassembled WGS sequence.
DR GO; GO:0005829; C:cytosol; IEA:UniProtKB-SubCell.
DR GO; GO:0005681; C:spliceosomal complex; IEA:InterPro.
DR GO; GO:0003723; F:RNA binding; IEA:InterPro.
DR GO; GO:0000387; P:spliceosomal snRNP assembly; IEA:UniProtKB-UniRule.
DR CDD; cd01721; Sm_D3; 1.
DR Gene3D; 2.30.30.100; -; 1.
DR InterPro; IPR027141; LSm4/Sm_D1/D3.
DR InterPro; IPR010920; LSM_dom_sf.
DR InterPro; IPR047575; Sm.
DR InterPro; IPR001163; Sm_dom_euk/arc.
DR InterPro; IPR034099; SmD3.
DR PANTHER; PTHR23338; SMALL NUCLEAR RIBONUCLEOPROTEIN SM; 1.
DR PANTHER; PTHR23338:SF17; SMALL NUCLEAR RIBONUCLEOPROTEIN SM D3; 1.
DR Pfam; PF01423; LSM; 1.
DR SMART; SM00651; Sm; 1.
DR SUPFAM; SSF50182; Sm-like ribonucleoproteins; 1.
DR PROSITE; PS52002; SM; 1.
PE 3: Inferred from homology;
KW mRNA processing {ECO:0000256|RuleBase:RU365050};
KW mRNA splicing {ECO:0000256|RuleBase:RU365050};
KW Nucleus {ECO:0000256|ARBA:ARBA00023242, ECO:0000256|RuleBase:RU365050};
KW Reference proteome {ECO:0000313|Proteomes:UP000218209};
KW Ribonucleoprotein {ECO:0000256|RuleBase:RU365050}.
FT DOMAIN 5..77
FT /note="Sm"
FT /evidence="ECO:0000259|PROSITE:PS52002"
FT REGION 87..108
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 91..108
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 173 AA; 18943 MW; 8FF55DCF046FFAB5 CRC64;
MSIGIPIMLL HEALPHTVTV ETRSGDTYRG RLTAAEDCMN VQLMDVSLTR RDGRVAALSH
VFIRGSKIRF VIVPDVLASA PMFKPAKTGG GGGEGRRRRS GGWPWEGRRW DGGAREGTRL
TGEGPGAPVW TGVTVFARGA AALTWRRCPL LVVFCMWVAC CPPQRLLREA WLC
//