ID A0A1Y0MBT1_9FLAO Unreviewed; 309 AA.
AC A0A1Y0MBT1;
DT 30-AUG-2017, integrated into UniProtKB/TrEMBL.
DT 30-AUG-2017, sequence version 1.
DT 27-MAR-2024, entry version 16.
DE SubName: Full=L,D-transpeptidase {ECO:0000313|EMBL:ARV07099.1};
GN ORFNames=BTO04_10550 {ECO:0000313|EMBL:ARV07099.1};
OS Polaribacter sp. SA4-10.
OC Bacteria; Bacteroidota; Flavobacteriia; Flavobacteriales;
OC Flavobacteriaceae.
OX NCBI_TaxID=754397 {ECO:0000313|EMBL:ARV07099.1, ECO:0000313|Proteomes:UP000195822};
RN [1] {ECO:0000313|EMBL:ARV07099.1, ECO:0000313|Proteomes:UP000195822}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=SA4-10 {ECO:0000313|EMBL:ARV07099.1,
RC ECO:0000313|Proteomes:UP000195822};
RA Kumagai Y., Yoshizawa S., Kogure K., Iwasaki W.;
RT "Trade-off between light-utilization and light-protection in marine
RT flavobacteria.";
RL Submitted (DEC-2016) to the EMBL/GenBank/DDBJ databases.
CC -!- PATHWAY: Cell wall biogenesis; peptidoglycan biosynthesis.
CC {ECO:0000256|ARBA:ARBA00004752}.
CC -!- SIMILARITY: Belongs to the YkuD family.
CC {ECO:0000256|ARBA:ARBA00005992}.
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DR EMBL; CP019331; ARV07099.1; -; Genomic_DNA.
DR AlphaFoldDB; A0A1Y0MBT1; -.
DR OrthoDB; 9787225at2; -.
DR UniPathway; UPA00219; -.
DR Proteomes; UP000195822; Chromosome.
DR GO; GO:0016740; F:transferase activity; IEA:UniProtKB-KW.
DR GO; GO:0009252; P:peptidoglycan biosynthetic process; IEA:UniProtKB-UniPathway.
DR CDD; cd16913; YkuD_like; 1.
DR Gene3D; 2.40.440.10; L,D-transpeptidase catalytic domain-like; 1.
DR InterPro; IPR005490; LD_TPept_cat_dom.
DR InterPro; IPR038063; Transpep_catalytic_dom.
DR PANTHER; PTHR30582; L,D-TRANSPEPTIDASE; 1.
DR PANTHER; PTHR30582:SF24; L,D-TRANSPEPTIDASE ERFK_SRFK-RELATED; 1.
DR Pfam; PF03734; YkuD; 1.
DR SUPFAM; SSF141523; L,D-transpeptidase catalytic domain-like; 1.
PE 3: Inferred from homology;
KW Hydrolase {ECO:0000256|ARBA:ARBA00022801};
KW Reference proteome {ECO:0000313|Proteomes:UP000195822};
KW Transferase {ECO:0000256|ARBA:ARBA00022679}.
FT DOMAIN 140..282
FT /note="L,D-transpeptidase catalytic"
FT /evidence="ECO:0000259|Pfam:PF03734"
SQ SEQUENCE 309 AA; 35817 MW; DB91B1DF5163F884 CRC64;
MKYKVNLGVL IVFFLIVIIG ISYSNVFTPL KEKTMIFNTD LRKNIPINSD ISVENYFQFL
DSIVLKYDSI TSYKLTEHLL VRANPWIIDS LKNTDYYTMK EKDSFVYNQK KMVVLKKGAT
LILPSINSVK KMLTSFENTK IDVNIPEYKL RIFENSKELF NFSVRVGRNE KKYLKMAGRI
LDLRTKTGKG KIVRHERFPD FYNPVNGYQY YVTKRDDKKV TKLPQIPFIE TEINGVRYGQ
LIHPTTNPVT LGKASSNGCI GTNESAAWVI YYYAPINTKI TIRYDLIVND LGNGNNLILK
DIYGYKKKE
//
