ID A0A1Y1RK47_9BACT Unreviewed; 858 AA.
AC A0A1Y1RK47;
DT 30-AUG-2017, integrated into UniProtKB/TrEMBL.
DT 30-AUG-2017, sequence version 1.
DT 24-JAN-2024, entry version 28.
DE RecName: Full=Sigma-54 factor interaction domain-containing protein {ECO:0000259|PROSITE:PS50045};
GN ORFNames=B6244_04065 {ECO:0000313|EMBL:OQY29396.1};
OS Candidatus Cloacimonetes bacterium 4572_55.
OC Bacteria; Candidatus Cloacimonadota.
OX NCBI_TaxID=1971726 {ECO:0000313|EMBL:OQY29396.1, ECO:0000313|Proteomes:UP000192623};
RN [1] {ECO:0000313|Proteomes:UP000192623}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RA Dombrowski N., Seitz K., Teske A., Baker B.;
RT "Novel pathways for hydrocarbon cycling and metabolic interdependencies in
RT hydrothermal sediment communities.";
RL Submitted (MAR-2017) to the EMBL/GenBank/DDBJ databases.
CC -!- CAUTION: The sequence shown here is derived from an EMBL/GenBank/DDBJ
CC whole genome shotgun (WGS) entry which is preliminary data.
CC {ECO:0000313|EMBL:OQY29396.1}.
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DR EMBL; NBMB01000010; OQY29396.1; -; Genomic_DNA.
DR AlphaFoldDB; A0A1Y1RK47; -.
DR STRING; 1971726.B6244_04065; -.
DR Proteomes; UP000192623; Unassembled WGS sequence.
DR GO; GO:0016020; C:membrane; IEA:UniProtKB-KW.
DR GO; GO:0005524; F:ATP binding; IEA:UniProtKB-KW.
DR GO; GO:0016887; F:ATP hydrolysis activity; IEA:InterPro.
DR GO; GO:0043565; F:sequence-specific DNA binding; IEA:InterPro.
DR GO; GO:0006355; P:regulation of DNA-templated transcription; IEA:InterPro.
DR CDD; cd00009; AAA; 1.
DR Gene3D; 1.10.8.60; -; 1.
DR Gene3D; 1.10.10.60; Homeodomain-like; 1.
DR Gene3D; 3.40.50.300; P-loop containing nucleotide triphosphate hydrolases; 1.
DR InterPro; IPR003593; AAA+_ATPase.
DR InterPro; IPR007890; CHASE2.
DR InterPro; IPR009057; Homeobox-like_sf.
DR InterPro; IPR002197; HTH_Fis.
DR InterPro; IPR027417; P-loop_NTPase.
DR InterPro; IPR002078; Sigma_54_int.
DR InterPro; IPR025662; Sigma_54_int_dom_ATP-bd_1.
DR PANTHER; PTHR32071:SF57; SIGMA L-DEPENDENT TRANSCRIPTIONAL REGULATOR YQIR-RELATED; 1.
DR PANTHER; PTHR32071; TRANSCRIPTIONAL REGULATORY PROTEIN; 1.
DR Pfam; PF05226; CHASE2; 1.
DR Pfam; PF02954; HTH_8; 1.
DR Pfam; PF00158; Sigma54_activat; 1.
DR SMART; SM00382; AAA; 1.
DR SMART; SM01080; CHASE2; 1.
DR SUPFAM; SSF46689; Homeodomain-like; 1.
DR SUPFAM; SSF52540; P-loop containing nucleoside triphosphate hydrolases; 1.
DR PROSITE; PS00675; SIGMA54_INTERACT_1; 1.
DR PROSITE; PS50045; SIGMA54_INTERACT_4; 1.
PE 4: Predicted;
KW ATP-binding {ECO:0000256|ARBA:ARBA00022840};
KW Coiled coil {ECO:0000256|SAM:Coils}; Membrane {ECO:0000256|SAM:Phobius};
KW Nucleotide-binding {ECO:0000256|ARBA:ARBA00022741};
KW Transcription {ECO:0000256|ARBA:ARBA00023163};
KW Transcription regulation {ECO:0000256|ARBA:ARBA00023015};
KW Transmembrane {ECO:0000256|SAM:Phobius};
KW Transmembrane helix {ECO:0000256|SAM:Phobius}.
FT TRANSMEM 346..365
FT /note="Helical"
FT /evidence="ECO:0000256|SAM:Phobius"
FT TRANSMEM 372..390
FT /note="Helical"
FT /evidence="ECO:0000256|SAM:Phobius"
FT TRANSMEM 396..418
FT /note="Helical"
FT /evidence="ECO:0000256|SAM:Phobius"
FT DOMAIN 538..765
FT /note="Sigma-54 factor interaction"
FT /evidence="ECO:0000259|PROSITE:PS50045"
FT COILED 425..506
FT /evidence="ECO:0000256|SAM:Coils"
SQ SEQUENCE 858 AA; 97471 MW; 15EB8E41537EE19F CRC64;
MRIKHKYPKR IRTTSFAIAL SIGIALFIAS FSPLSDYIEN RIYDFFLRSR TDPVVSSEVI
IVFIGDDTVA TLGSWPLTRD YYATLIHILN EFGAKQIVFD LLFSEEDAKG EFNQALVEET
QRAGNVYLPY YMLTGNVRPF PNFNSTEESP AQPEGGEPIA TRRIRFPVAF DCIFPFENLK
AACQGLGHSN VSLDPDGIIR RHPLFINFND VLFPSLGMVV ASDYLDISSQ EVQIISDNFI
QLDNAHRIPV DDNGNMLINF NKELTQFENY SMLQLFQSYK QYSNGETPFI APESFKDKIV
LIGMTATGGT DLNPTPVSAL YPLVGAQATI ISNILTENYL RTAPSWALAL EMIVLMLILT
CFLVMFRSYF NLLLSILLLI TVGVGHFVVI TSTGLYINTL LPLIAIVLAF SVINVYLFRL
ERISRERLRN RLSVIIEQLR KKDRQIYQVE AALSKKSEEM DGLIKSMEEE EKISLNDEID
RLRQERDALS DEHHNLVNEK SALSEKLEIM KGVAKKFIFS TSKKPSGYDQ LKGDYNQIIG
KSGSLLQILQ KVDRAARFDS NILITGESGV GKELIARAVH YNSPRKKGAL VIVNCAAIPS
ELIESELFGH EKGSFTSAVS RRIGKFELAH HGTLFLDEIG DMPINMQAKI LRAIQQREFR
RVGGTKNIHV DIRLVAATNK DLLEEVKNNH FREDLFHRLN VIPIHVPALR DRKEDIPLLV
EYSLSKKSTA EKPFTITQGV MAAFLSYPWP GNIRELEQAV ERMTVLADGD RLTIDDLSSE
LIESATKKSA RLWKWGTEIS LKRAVEEFER KYLYKKLRQY EWNIPEVSDK LQIERRTLQK
KMKKHGIVRE KTTADHGD
//
