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Database: UniProt
Entry: A0A1Y1VRJ1_9FUNG
LinkDB: A0A1Y1VRJ1_9FUNG
Original site: A0A1Y1VRJ1_9FUNG 
ID   A0A1Y1VRJ1_9FUNG        Unreviewed;       282 AA.
AC   A0A1Y1VRJ1;
DT   30-AUG-2017, integrated into UniProtKB/TrEMBL.
DT   30-AUG-2017, sequence version 1.
DT   22-FEB-2023, entry version 16.
DE   SubName: Full=Insert subdomain of RNA polymerase alpha subunit {ECO:0000313|EMBL:ORX63899.1};
GN   ORFNames=DL89DRAFT_230317 {ECO:0000313|EMBL:ORX63899.1},
GN   DL89DRAFT_25914 {ECO:0000313|EMBL:ORX75008.1};
OS   Linderina pennispora.
OC   Eukaryota; Fungi; Fungi incertae sedis; Zoopagomycota; Kickxellomycotina;
OC   Kickxellomycetes; Kickxellales; Kickxellaceae; Linderina.
OX   NCBI_TaxID=61395 {ECO:0000313|EMBL:ORX63899.1, ECO:0000313|Proteomes:UP000193922};
RN   [1] {ECO:0000313|EMBL:ORX63899.1, ECO:0000313|Proteomes:UP000193922}
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=ATCC 12442 {ECO:0000313|EMBL:ORX63899.1,
RC   ECO:0000313|Proteomes:UP000193922};
RG   DOE Joint Genome Institute;
RA   Mondo S.J., Dannebaum R.O., Kuo R.C., Labutti K., Haridas S., Kuo A.,
RA   Salamov A., Ahrendt S.R., Lipzen A., Sullivan W., Andreopoulos W.B.,
RA   Clum A., Lindquist E., Daum C., Ramamoorthy G.K., Gryganskyi A., Culley D.,
RA   Magnuson J.K., James T.Y., O'Malley M.A., Stajich J.E., Spatafora J.W.,
RA   Visel A., Grigoriev I.V.;
RT   "Pervasive Adenine N6-methylation of Active Genes in Fungi.";
RL   Submitted (JUL-2016) to the EMBL/GenBank/DDBJ databases.
CC   -!- SIMILARITY: Belongs to the archaeal Rpo3/eukaryotic RPB3 RNA polymerase
CC       subunit family. {ECO:0000256|ARBA:ARBA00025804}.
CC   -!- CAUTION: The sequence shown here is derived from an EMBL/GenBank/DDBJ
CC       whole genome shotgun (WGS) entry which is preliminary data.
CC       {ECO:0000313|EMBL:ORX63899.1}.
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DR   EMBL; MCFD01000143; ORX63899.1; -; Genomic_DNA.
DR   EMBL; MCFD01000001; ORX75008.1; -; Genomic_DNA.
DR   AlphaFoldDB; A0A1Y1VRJ1; -.
DR   STRING; 61395.A0A1Y1VRJ1; -.
DR   OrthoDB; 5472982at2759; -.
DR   Proteomes; UP000193922; Unassembled WGS sequence.
DR   GO; GO:0055029; C:nuclear DNA-directed RNA polymerase complex; IEA:UniProt.
DR   GO; GO:0003677; F:DNA binding; IEA:InterPro.
DR   GO; GO:0003899; F:DNA-directed 5'-3' RNA polymerase activity; IEA:InterPro.
DR   GO; GO:0046983; F:protein dimerization activity; IEA:InterPro.
DR   GO; GO:0006351; P:DNA-templated transcription; IEA:InterPro.
DR   CDD; cd07031; RNAP_II_RPB3; 1.
DR   Gene3D; 2.170.120.12; DNA-directed RNA polymerase, insert domain; 1.
DR   Gene3D; 3.30.1360.10; RNA polymerase, RBP11-like subunit; 1.
DR   HAMAP; MF_00320; RNApol_arch_Rpo3; 1.
DR   InterPro; IPR001514; DNA-dir_RNA_pol_30-40kDasu_CS.
DR   InterPro; IPR011262; DNA-dir_RNA_pol_insert.
DR   InterPro; IPR011263; DNA-dir_RNA_pol_RpoA/D/Rpb3.
DR   InterPro; IPR036603; RBP11-like.
DR   InterPro; IPR022842; RNAP_Rpo3/Rpb3/RPAC1.
DR   InterPro; IPR036643; RNApol_insert_sf.
DR   PANTHER; PTHR11800; DNA-DIRECTED RNA POLYMERASE; 1.
DR   PANTHER; PTHR11800:SF2; DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB3; 1.
DR   Pfam; PF01000; RNA_pol_A_bac; 1.
DR   Pfam; PF01193; RNA_pol_L; 1.
DR   SMART; SM00662; RPOLD; 1.
DR   SUPFAM; SSF56553; Insert subdomain of RNA polymerase alpha subunit; 1.
DR   SUPFAM; SSF55257; RBP11-like subunits of RNA polymerase; 1.
DR   PROSITE; PS00446; RNA_POL_D_30KD; 1.
PE   3: Inferred from homology;
KW   DNA-directed RNA polymerase {ECO:0000256|ARBA:ARBA00022478};
KW   Reference proteome {ECO:0000313|Proteomes:UP000193922};
KW   Transcription {ECO:0000256|ARBA:ARBA00023163}.
FT   DOMAIN          24..263
FT                   /note="DNA-directed RNA polymerase RpoA/D/Rpb3-type"
FT                   /evidence="ECO:0000259|SMART:SM00662"
SQ   SEQUENCE   282 AA;  31814 MW;  7AE1601FE24E063E CRC64;
     MESETFGAGD SDPQLRIRSI DQTNVNFVLS NTHLSVANSL RRTMIAEVPT MAIDLVEFIE
     NTSVLADEFI AHRLGMIPLV SHDVDKFKYT RDCICTDYCK DCSVEFRLHV KCTEEGTRTV
     TSHELISSNK SVVPVLEGDD DPGIILLKLR KGQEINIHCI AKKGVAKEHA KWSPCCAVAF
     EYDPHNNLRH LDYWYEKSIE KEWPLSENAK EEDKTDPDAP FDYKAEPTTF YFNVETVGSI
     KPQNVVIMAT RILQEKLGTL LLALEDDQNP DAAAAADDGD WY
//
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