ID A0A1Y3BV55_HELAN Unreviewed; 1515 AA.
AC A0A1Y3BV55;
DT 30-AUG-2017, integrated into UniProtKB/TrEMBL.
DT 30-AUG-2017, sequence version 1.
DT 27-MAR-2024, entry version 25.
DE RecName: Full=RNA-directed DNA polymerase {ECO:0000256|ARBA:ARBA00012493};
DE EC=2.7.7.49 {ECO:0000256|ARBA:ARBA00012493};
GN ORFNames=HannXRQ_Chr00c0033g0571201 {ECO:0000313|EMBL:OTF84672.1};
OS Helianthus annuus (Common sunflower).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC asterids; campanulids; Asterales; Asteraceae; Asteroideae;
OC Heliantheae alliance; Heliantheae; Helianthus.
OX NCBI_TaxID=4232 {ECO:0000313|EMBL:OTF84672.1};
RN [1] {ECO:0000313|EMBL:OTF84672.1}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC TISSUE=Leaves {ECO:0000313|EMBL:OTF84672.1};
RA Langlade N., Munos S.;
RT "Sunflower complete genome.";
RL Submitted (FEB-2017) to the EMBL/GenBank/DDBJ databases.
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DR EMBL; KZ113357; OTF84672.1; -; Genomic_DNA.
DR InParanoid; A0A1Y3BV55; -.
DR GO; GO:0043227; C:membrane-bounded organelle; IEA:UniProt.
DR GO; GO:0004190; F:aspartic-type endopeptidase activity; IEA:InterPro.
DR GO; GO:0003676; F:nucleic acid binding; IEA:InterPro.
DR GO; GO:0003964; F:RNA-directed DNA polymerase activity; IEA:UniProtKB-KW.
DR GO; GO:0008270; F:zinc ion binding; IEA:InterPro.
DR GO; GO:0015074; P:DNA integration; IEA:InterPro.
DR GO; GO:0006508; P:proteolysis; IEA:InterPro.
DR CDD; cd00303; retropepsin_like; 1.
DR CDD; cd09274; RNase_HI_RT_Ty3; 1.
DR CDD; cd01647; RT_LTR; 1.
DR Gene3D; 1.10.340.70; -; 1.
DR Gene3D; 3.30.70.270; -; 2.
DR Gene3D; 2.40.70.10; Acid Proteases; 1.
DR Gene3D; 3.10.10.10; HIV Type 1 Reverse Transcriptase, subunit A, domain 1; 1.
DR Gene3D; 3.30.420.10; Ribonuclease H-like superfamily/Ribonuclease H; 1.
DR Gene3D; 4.10.60.10; Zinc finger, CCHC-type; 1.
DR InterPro; IPR001969; Aspartic_peptidase_AS.
DR InterPro; IPR043502; DNA/RNA_pol_sf.
DR InterPro; IPR001584; Integrase_cat-core.
DR InterPro; IPR041588; Integrase_H2C2.
DR InterPro; IPR021109; Peptidase_aspartic_dom_sf.
DR InterPro; IPR043128; Rev_trsase/Diguanyl_cyclase.
DR InterPro; IPR012337; RNaseH-like_sf.
DR InterPro; IPR036397; RNaseH_sf.
DR InterPro; IPR000477; RT_dom.
DR InterPro; IPR041373; RT_RNaseH.
DR InterPro; IPR045358; Ty3_capsid.
DR InterPro; IPR001878; Znf_CCHC.
DR InterPro; IPR036875; Znf_CCHC_sf.
DR PANTHER; PTHR45835:SF105; IPP TRANSFERASE; 1.
DR PANTHER; PTHR45835; YALI0A06105P; 1.
DR Pfam; PF17921; Integrase_H2C2; 1.
DR Pfam; PF17917; RT_RNaseH; 1.
DR Pfam; PF08284; RVP_2; 1.
DR Pfam; PF00078; RVT_1; 1.
DR Pfam; PF19259; Ty3_capsid; 1.
DR Pfam; PF00098; zf-CCHC; 1.
DR SMART; SM00343; ZnF_C2HC; 2.
DR SUPFAM; SSF50630; Acid proteases; 1.
DR SUPFAM; SSF56672; DNA/RNA polymerases; 1.
DR SUPFAM; SSF57756; Retrovirus zinc finger-like domains; 1.
DR SUPFAM; SSF53098; Ribonuclease H-like; 1.
DR PROSITE; PS00141; ASP_PROTEASE; 1.
DR PROSITE; PS50994; INTEGRASE; 1.
DR PROSITE; PS50878; RT_POL; 1.
DR PROSITE; PS50158; ZF_CCHC; 2.
PE 4: Predicted;
KW Coiled coil {ECO:0000256|SAM:Coils};
KW Hydrolase {ECO:0000256|ARBA:ARBA00022801};
KW Metal-binding {ECO:0000256|PROSITE-ProRule:PRU00047};
KW Nucleotidyltransferase {ECO:0000256|ARBA:ARBA00022695};
KW RNA-directed DNA polymerase {ECO:0000256|ARBA:ARBA00022918,
KW ECO:0000313|EMBL:OTF84672.1}; Transferase {ECO:0000256|ARBA:ARBA00022679};
KW Zinc {ECO:0000256|PROSITE-ProRule:PRU00047};
KW Zinc-finger {ECO:0000256|PROSITE-ProRule:PRU00047}.
FT DOMAIN 266..281
FT /note="CCHC-type"
FT /evidence="ECO:0000259|PROSITE:PS50158"
FT DOMAIN 310..325
FT /note="CCHC-type"
FT /evidence="ECO:0000259|PROSITE:PS50158"
FT DOMAIN 603..782
FT /note="Reverse transcriptase"
FT /evidence="ECO:0000259|PROSITE:PS50878"
FT DOMAIN 1124..1287
FT /note="Integrase catalytic"
FT /evidence="ECO:0000259|PROSITE:PS50994"
FT REGION 188..243
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 275..363
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 1482..1515
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COILED 1308..1335
FT /evidence="ECO:0000256|SAM:Coils"
FT COMPBIAS 209..243
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 282..308
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 324..362
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 1515 AA; 172518 MW; 2E224BC5FEDAD4D4 CRC64;
MDCRPSSFSG TEGAVGLLHW FEKLESVFEM CECPEARRVK FATGTLEGIA LTWWNAQVQI
LGLAAANATP WNEFKELIKR EYCTREDIHK LEDELYNLKM VGSEIKAYTK RSNELAVLCP
TMVDPPYKRI ELYLKGLAPE IQSHVTSANL NNIQEIQRLA HRITDQAVDQ GKLPKRVGAT
ATAVTSVTPT AATSATPSEN KRKWDGDSSR GSASVQSQTQ QRRTNDYQSP SQQSSGSQGH
SGYKGNHPWC NRCNKHHSGR CRRSQCQRCH KMGHEAKDCR SARPVNQNQQ LPPPAPQNQQ
QQPQRGNRGC FQCGAEGHYK RDCPQLNQNR NNNNNQGNGN NNNQGNGNNN NGGNNNNNGN
EARGRAFVLG RGDAVNDPNV VMGKFLLDDI YVTVLFDSGA DTSYMSMKMS NLLKRTPTPL
DTKHVVELAN GKSVEAAHVV KGCSIVLAGQ TFTIDLIPIV LGSFDVVIGM DWLSQHHAEI
LCKEKVIRIP RSSQEPLEVQ GDKSGAVVGI ISYLKAQKCL RKGHTAILAL VTDASAKEKK
LEDIPVVRDF PQVFPEDLPG LPPHRQVEFQ IELAPGAAPI ARAPYRLAPT ELEELSKQLQ
ELLEKGFIRP SSSPWGAPVL FVKKKDGTFR MCIDYRELNK VTVKNRYPLP RIDDLFDQLQ
GSCYYSKINL RSGYHQLRVR DEDVSKTAFR TRYGHYEFLV MPFGLTNAPA VFMDLMNRVC
KPYLDKFVIV FIDDILIYSK SQEEHEQHLR LILELLRKEQ LYAKFSKCDF WLREVHFLGH
VVNKDGIHVD PSKVDSIRNW PAPRTPTEIR QFLGLAGYYR RFIKDFSKIA QPLTMLTQKG
VVYRWGNTQE TAFQYLKDRL CSAPILSLPE GTDDFVVYCD ASIQGLGCVL MQRDKVIAYA
SRQLKVHERN YTTHDLELGA VVFALKIWRH YLYGTRCTIY TDHRSLEHIL KQKDLNMRQR
RWVELLNDYE CAIKYHPGKA NVVADALSRK DTLPKRVRAL QLTIQSSLPA QLRAAQLEAL
KPENVKAEAL RGSRQRMEQK EDGAYYVTGR IWVPLYGGLR ELVMDEAHKS RYSVHPGSDK
MYHDISTTYW WPSMKAHIAT YVGKCLTCAR VKVEYQKPAG LLQQPKIPQW KWEEISMDFV
TGLPRSQRGN DTIWVIVDRL TKSAHFLAIK ETDKFSTLAD VYLKEVVSRH GVPTSIISDR
DARFTSELWQ AMHKSFGSRL DMSTAYHPQT DGQSERTIQT LEDMLRACVI DFGNGWEKHL
PLVEFSYNNS YHTSIQAAPF EALYGRKCRS PLCWAEVGDS QITGPEIVVD ATEKIAQIRQ
RMAAARDRQK AYADKRRKPL EFEVGDRVLL KVSPWKGVVR FGKRGKLNPR YVGPFEILEK
IGKVAYRLNL PPELGAVHNV FHVSNLKKCL SDETLIVPFK ELTIDERLQF VEEPVEITDR
DVKVLKHKRI PLVRVRWNSQ RGPEYTWERE DQMKEKYPQL FETNASTSEA EATTTEFRDE
IPNQRGDDVT PQENQ
//
