ID A0A1Y4SBD8_9FIRM Unreviewed; 483 AA.
AC A0A1Y4SBD8;
DT 30-AUG-2017, integrated into UniProtKB/TrEMBL.
DT 30-AUG-2017, sequence version 1.
DT 27-MAR-2024, entry version 23.
DE RecName: Full=YkuD domain-containing protein {ECO:0008006|Google:ProtNLM};
GN ORFNames=B5E79_11065 {ECO:0000313|EMBL:OUQ27227.1};
OS Massilimicrobiota sp. An134.
OC Bacteria; Bacillota; Erysipelotrichia; Erysipelotrichales;
OC Erysipelotrichaceae; Massilimicrobiota.
OX NCBI_TaxID=1965557 {ECO:0000313|EMBL:OUQ27227.1, ECO:0000313|Proteomes:UP000195713};
RN [1] {ECO:0000313|Proteomes:UP000195713}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=An134 {ECO:0000313|Proteomes:UP000195713};
RA Medvecky M., Cejkova D., Polansky O., Karasova D., Kubasova T., Cizek A.,
RA Rychlik I.;
RT "Function of individual gut microbiota members based on whole genome
RT sequencing of pure cultures obtained from chicken caecum.";
RL Submitted (APR-2017) to the EMBL/GenBank/DDBJ databases.
CC -!- PATHWAY: Cell wall biogenesis; peptidoglycan biosynthesis.
CC {ECO:0000256|ARBA:ARBA00004752}.
CC -!- CAUTION: The sequence shown here is derived from an EMBL/GenBank/DDBJ
CC whole genome shotgun (WGS) entry which is preliminary data.
CC {ECO:0000313|EMBL:OUQ27227.1}.
CC ---------------------------------------------------------------------------
CC Copyrighted by the UniProt Consortium, see https://www.uniprot.org/terms
CC Distributed under the Creative Commons Attribution (CC BY 4.0) License
CC ---------------------------------------------------------------------------
DR EMBL; NFLH01000033; OUQ27227.1; -; Genomic_DNA.
DR AlphaFoldDB; A0A1Y4SBD8; -.
DR UniPathway; UPA00219; -.
DR Proteomes; UP000195713; Unassembled WGS sequence.
DR GO; GO:0016020; C:membrane; IEA:UniProtKB-KW.
DR GO; GO:0016740; F:transferase activity; IEA:UniProtKB-KW.
DR GO; GO:0009252; P:peptidoglycan biosynthetic process; IEA:UniProtKB-UniPathway.
DR CDD; cd16913; YkuD_like; 1.
DR Gene3D; 3.10.20.800; -; 1.
DR Gene3D; 2.40.440.10; L,D-transpeptidase catalytic domain-like; 1.
DR InterPro; IPR038054; LD_TPept-like_central_sf.
DR InterPro; IPR005490; LD_TPept_cat_dom.
DR InterPro; IPR038063; Transpep_catalytic_dom.
DR InterPro; IPR022029; YoaR-like_PG-bd.
DR PANTHER; PTHR30582; L,D-TRANSPEPTIDASE; 1.
DR PANTHER; PTHR30582:SF2; SLL0670 PROTEIN; 1.
DR Pfam; PF12229; PG_binding_4; 2.
DR Pfam; PF03734; YkuD; 1.
DR SUPFAM; SSF141523; L,D-transpeptidase catalytic domain-like; 1.
DR SUPFAM; SSF143985; L,D-transpeptidase pre-catalytic domain-like; 1.
PE 4: Predicted;
KW Membrane {ECO:0000256|SAM:Phobius};
KW Reference proteome {ECO:0000313|Proteomes:UP000195713};
KW Transferase {ECO:0000256|ARBA:ARBA00022679};
KW Transmembrane {ECO:0000256|SAM:Phobius};
KW Transmembrane helix {ECO:0000256|SAM:Phobius}.
FT TRANSMEM 21..45
FT /note="Helical"
FT /evidence="ECO:0000256|SAM:Phobius"
FT DOMAIN 96..200
FT /note="YoaR-like putative peptidoglycan binding"
FT /evidence="ECO:0000259|Pfam:PF12229"
FT DOMAIN 225..334
FT /note="YoaR-like putative peptidoglycan binding"
FT /evidence="ECO:0000259|Pfam:PF12229"
FT DOMAIN 356..480
FT /note="L,D-transpeptidase catalytic"
FT /evidence="ECO:0000259|Pfam:PF03734"
SQ SEQUENCE 483 AA; 54634 MW; 2A1BDFDABB0EF810 CRC64;
MEETKTQERE PRKKIRIKKD HVLKAALILG ALIIVVYLFG CFYYHNRFMS HTTINDIDVS
GFTYEDASST LEKALTSQTL SLTFVDGEKE TLKQTDSGIS FNQNNSIQKT LEQQNYFLWF
THFFQSTEIQ LNDLLITDQK QLEEAVNSLQ HVKDKQIAPV DAKVEYKDDE FVITPEVFGT
TIQNDQLINA VEKAFQTRQD SINLKEQHIY KEPQLTSQDE TITNLQKLAK EYCDAKITYQ
TTSGQVVLDG NDLIQWLSID EKGNYYYDEE EFQKQATKFV KETLAPQINI IGKAKTFTGA
NGTRTVSGGN YGYKLNQSKE VTGLLADIKA HKKETRTPVV TGVQASYSNG GIGHTFVEID
LTGQHMWFVK NGNVVLQSDI VSGLPSDPDK RTPGGTYYIY FMQRNRTLIG EIQEDGKPEY
ETPVAYWMAF NGGIGLHDAT WQSAFGGDRY KTYGSHGCIN LPLDVAASLY SQLSVNIPVV
CYY
//
