ID A0A1Z5JC24_FISSO Unreviewed; 960 AA.
AC A0A1Z5JC24;
DT 27-SEP-2017, integrated into UniProtKB/TrEMBL.
DT 27-SEP-2017, sequence version 1.
DT 24-JAN-2024, entry version 20.
DE SubName: Full=Pre-mRNA-processing factor 6 {ECO:0000313|EMBL:GAX11509.1};
GN ORFNames=FisN_22Lh200 {ECO:0000313|EMBL:GAX11509.1};
OS Fistulifera solaris (Oleaginous diatom).
OC Eukaryota; Sar; Stramenopiles; Ochrophyta; Bacillariophyta;
OC Bacillariophyceae; Bacillariophycidae; Naviculales; Naviculaceae;
OC Fistulifera.
OX NCBI_TaxID=1519565 {ECO:0000313|EMBL:GAX11509.1, ECO:0000313|Proteomes:UP000198406};
RN [1] {ECO:0000313|EMBL:GAX11509.1, ECO:0000313|Proteomes:UP000198406}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=JPCC DA0580 {ECO:0000313|EMBL:GAX11509.1,
RC ECO:0000313|Proteomes:UP000198406};
RX PubMed=25634988; DOI=10.1105/tpc.114.135194;
RA Tanaka T., Maeda Y., Veluchamy A., Tanaka M., Abida H., Marechal E.,
RA Bowler C., Muto M., Sunaga Y., Tanaka M., Yoshino T., Taniguchi T.,
RA Fukuda Y., Nemoto M., Matsumoto M., Wong P.S., Aburatani S., Fujibuchi W.;
RT "Oil accumulation by the oleaginous diatom Fistulifera solaris as revealed
RT by the genome and transcriptome.";
RL Plant Cell 27:162-176(2015).
CC -!- CAUTION: The sequence shown here is derived from an EMBL/GenBank/DDBJ
CC whole genome shotgun (WGS) entry which is preliminary data.
CC {ECO:0000313|EMBL:GAX11509.1}.
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DR EMBL; BDSP01000041; GAX11509.1; -; Genomic_DNA.
DR AlphaFoldDB; A0A1Z5JC24; -.
DR InParanoid; A0A1Z5JC24; -.
DR OrthoDB; 655233at2759; -.
DR Proteomes; UP000198406; Unassembled WGS sequence.
DR GO; GO:0000398; P:mRNA splicing, via spliceosome; IEA:InterPro.
DR Gene3D; 1.25.40.10; Tetratricopeptide repeat domain; 4.
DR InterPro; IPR003107; HAT.
DR InterPro; IPR010491; PRP1_N.
DR InterPro; IPR045075; Syf1-like.
DR InterPro; IPR011990; TPR-like_helical_dom_sf.
DR InterPro; IPR019734; TPR_repeat.
DR PANTHER; PTHR11246; PRE-MRNA SPLICING FACTOR; 1.
DR PANTHER; PTHR11246:SF1; PRE-MRNA-PROCESSING FACTOR 6; 1.
DR Pfam; PF06424; PRP1_N; 2.
DR Pfam; PF13428; TPR_14; 1.
DR Pfam; PF14559; TPR_19; 1.
DR SMART; SM00386; HAT; 10.
DR SMART; SM00028; TPR; 4.
DR SUPFAM; SSF48452; TPR-like; 4.
PE 4: Predicted;
KW Reference proteome {ECO:0000313|Proteomes:UP000198406};
KW Repeat {ECO:0000256|ARBA:ARBA00022737}.
FT DOMAIN 11..39
FT /note="PRP1 splicing factor N-terminal"
FT /evidence="ECO:0000259|Pfam:PF06424"
FT DOMAIN 87..180
FT /note="PRP1 splicing factor N-terminal"
FT /evidence="ECO:0000259|Pfam:PF06424"
FT REGION 1..143
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 100..143
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 960 AA; 105207 MW; BE6BE9409F4FB07A CRC64;
MSAFRGRGAV PPKNYVPGLG RGAAGFTTRS DVGPVVPEDA VTGSGSRAAE ARKQLQFGAP
PANYVAGAGR GAGTLNAQGD EGPVGAYDSF SGYSAAPQKG QYDDDDDEAD KIWATIDERM
NRKRKKKGDN TQDDADDDAG GRKRVRARIG AQFHELKEKL AEVTEDQWAS IPDVGDHSLK
YKQQRRQQDT FTPLSDSLIE QRNKSQLDAS AGNAALAGTT IADDGSGFKS VVADMSGLSA
ARGTVLGISL DRMSGSVAGN QTSIDPKGYL TSLSGIQSVS NAEVADINKA RLLLKSVRDT
NPKHGPGWIA AARVEEAAGK LLQARKIIQE ACEICADNED VWLEAARLHP HDVAKSILAT
AVRRVPKSVK IFLKAADLEH VEANKKAVLR KGLEANPSSI TLWKAAIALE NAEDARLLLQ
VAVEKVPHSV EMWLALARLE SYKNAQRVLN SARKALPNDR SIWIAAARLE ESQNHDEVID
KIIQRAVKSL EKNEAVVTRA QWLQEAEAAE SSGAPLTSAA IIKYTIGKDV DDEDRQRTWT
EDAKGAAARG SIATARAILS HALSAFPTKR TLWTQAIDLE RNHGTAKTLD EVLEAASERL
PQVEIFWLLR AKEQWVNGDV NKARDILAKA FAVNPESEAV WLAASKLEHE NGEVERARFF
LERARQRAPT ARVYMKAALL EREQTNFDDA LQLIEEGLSK FVKFSKLYMM GGQICSENLP
RNKTSLSRAR KFYERGLKEC PESHILWILA SRLEEEAVHF EDVATNSQGS GATKARSILE
LARLKNPKNP DLWLESIRLE RRVGTTKLAE TQMAKALQEC PKSGILLAES ILSSPRVEQK
SKAAEAIKRC PDDPLVIAAV ASLFASENKN DKARKWFDRA TVLNPDIGDI WARFYLFELK
SGTQDQQEKV KAACIAAEPK HGDIWASIMK DMKNRGKSVA EGLELVAEHI LLEQKKALVS
//