ID A0A1Z5RCF1_SORBI Unreviewed; 641 AA.
AC A0A1Z5RCF1;
DT 27-SEP-2017, integrated into UniProtKB/TrEMBL.
DT 27-SEP-2017, sequence version 1.
DT 27-MAR-2024, entry version 16.
DE RecName: Full=CCHC-type domain-containing protein {ECO:0000259|PROSITE:PS50158};
GN ORFNames=SORBI_3006G018650 {ECO:0000313|EMBL:OQU81151.1};
OS Sorghum bicolor (Sorghum) (Sorghum vulgare).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; PACMAD clade;
OC Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum.
OX NCBI_TaxID=4558 {ECO:0000313|EMBL:OQU81151.1, ECO:0000313|Proteomes:UP000000768};
RN [1] {ECO:0000313|EMBL:OQU81151.1, ECO:0000313|Proteomes:UP000000768}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. BTx623 {ECO:0000313|Proteomes:UP000000768};
RX PubMed=19189423; DOI=10.1038/nature07723;
RA Paterson A.H., Bowers J.E., Bruggmann R., Dubchak I., Grimwood J.,
RA Gundlach H., Haberer G., Hellsten U., Mitros T., Poliakov A., Schmutz J.,
RA Spannagl M., Tang H., Wang X., Wicker T., Bharti A.K., Chapman J.,
RA Feltus F.A., Gowik U., Grigoriev I.V., Lyons E., Maher C.A., Martis M.,
RA Narechania A., Otillar R.P., Penning B.W., Salamov A.A., Wang Y., Zhang L.,
RA Carpita N.C., Freeling M., Gingle A.R., Hash C.T., Keller B., Klein P.,
RA Kresovich S., McCann M.C., Ming R., Peterson D.G., Mehboob-ur-Rahman,
RA Ware D., Westhoff P., Mayer K.F., Messing J., Rokhsar D.S.;
RT "The Sorghum bicolor genome and the diversification of grasses.";
RL Nature 457:551-556(2009).
RN [2] {ECO:0000313|Proteomes:UP000000768}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. BTx623 {ECO:0000313|Proteomes:UP000000768};
RX PubMed=29161754; DOI=10.1111/tpj.13781;
RA McCormick R.F., Truong S.K., Sreedasyam A., Jenkins J., Shu S., Sims D.,
RA Kennedy M., Amirebrahimi M., Weers B.D., McKinley B., Mattison A.,
RA Morishige D.T., Grimwood J., Schmutz J., Mullet J.E.;
RT "The Sorghum bicolor reference genome: improved assembly, gene annotations,
RT a transcriptome atlas, and signatures of genome organization.";
RL Plant J. 93:338-354(2018).
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DR EMBL; CM000765; OQU81151.1; -; Genomic_DNA.
DR AlphaFoldDB; A0A1Z5RCF1; -.
DR STRING; 4558.A0A1Z5RCF1; -.
DR EnsemblPlants; OQU81151; OQU81151; SORBI_3006G018650.
DR Gramene; OQU81151; OQU81151; SORBI_3006G018650.
DR InParanoid; A0A1Z5RCF1; -.
DR Proteomes; UP000000768; Chromosome 6.
DR GO; GO:0005737; C:cytoplasm; IBA:GO_Central.
DR GO; GO:0003729; F:mRNA binding; IBA:GO_Central.
DR GO; GO:0003727; F:single-stranded RNA binding; IBA:GO_Central.
DR GO; GO:0045182; F:translation regulator activity; IBA:GO_Central.
DR GO; GO:0008270; F:zinc ion binding; IEA:InterPro.
DR GO; GO:2000767; P:positive regulation of cytoplasmic translation; IBA:GO_Central.
DR Gene3D; 4.10.60.10; Zinc finger, CCHC-type; 3.
DR InterPro; IPR001878; Znf_CCHC.
DR InterPro; IPR036875; Znf_CCHC_sf.
DR PANTHER; PTHR23002:SF89; CCHC-TYPE DOMAIN-CONTAINING PROTEIN; 1.
DR PANTHER; PTHR23002; ZINC FINGER CCHC DOMAIN CONTAINING PROTEIN; 1.
DR Pfam; PF00098; zf-CCHC; 2.
DR SMART; SM00343; ZnF_C2HC; 4.
DR SUPFAM; SSF57756; Retrovirus zinc finger-like domains; 3.
DR PROSITE; PS50158; ZF_CCHC; 3.
PE 4: Predicted;
KW Metal-binding {ECO:0000256|PROSITE-ProRule:PRU00047};
KW Reference proteome {ECO:0000313|Proteomes:UP000000768};
KW Zinc {ECO:0000256|PROSITE-ProRule:PRU00047};
KW Zinc-finger {ECO:0000256|PROSITE-ProRule:PRU00047}.
FT DOMAIN 411..426
FT /note="CCHC-type"
FT /evidence="ECO:0000259|PROSITE:PS50158"
FT DOMAIN 519..534
FT /note="CCHC-type"
FT /evidence="ECO:0000259|PROSITE:PS50158"
FT DOMAIN 567..581
FT /note="CCHC-type"
FT /evidence="ECO:0000259|PROSITE:PS50158"
FT REGION 130..186
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 541..564
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 137..153
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 154..176
FT /note="Acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 641 AA; 72890 MW; 19D936B275E79A40 CRC64;
MAAYGLDVEC PHIFDGTHFA RWRNWMQCNF KFISPQMWWI VDVSFSCAID KKVATQAQKK
CLHLDCQATN IFYSSMKDNI FGEIMDMKSA HEIWVFLNEK YGAISKEDDV PKVDTNEDVE
HDHNMVAVED CSTSWSSEED DDHSTRSLDK DDDDATSDAN DDATPCTLDD EGDGYESDAS
TSSSTTSPYC FMPHGDTKVS IGDVIIDCDG PKFELVCKLS KALRNELAKT NKFKNEKSFL
KTTCEQQKHL LYVTTCSHEE LKLVHEELCV AHDNLVKHHA FLTKRLFNEE TKTSESSSFG
SNDQSHMITN PCDVGKKHVS TSCHDLLSMP CSSHIDACST SMSCETNLLK ENNELKNKVK
NLSNKLERCY TFEHILKTQR NYGDKCGLGF KKKMTKGKRK QEREKLSHFM CYRCHEVGHL
ANACPNKEKL KKMKEEERLK HVKCFKCRTW GHLTSMCPTK QLVKQQAKPQ QNPQVEQEKK
PQAQVKIYHV DGGDMGMMKK KTRRGGRQSR SSKDLSHIKC FECKNDGHFA SKCPTKLEKK
AQATLKRQGN EKQHMSKEEK AQSKRSCYLC RERGHMAYSC PLGNSSKPIS IDNHNMLRKD
GDGTSMVAIT RHPATHTKAS PKYVAPNLRG PKLVWVPSKS G
//
