ID A0A1Z5RHY6_SORBI Unreviewed; 642 AA.
AC A0A1Z5RHY6;
DT 27-SEP-2017, integrated into UniProtKB/TrEMBL.
DT 27-SEP-2017, sequence version 1.
DT 27-MAR-2024, entry version 12.
DE RecName: Full=CCHC-type domain-containing protein {ECO:0000259|PROSITE:PS50158};
GN ORFNames=SORBI_3005G110484 {ECO:0000313|EMBL:OQU83380.1};
OS Sorghum bicolor (Sorghum) (Sorghum vulgare).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; PACMAD clade;
OC Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum.
OX NCBI_TaxID=4558 {ECO:0000313|EMBL:OQU83380.1, ECO:0000313|Proteomes:UP000000768};
RN [1] {ECO:0000313|EMBL:OQU83380.1, ECO:0000313|Proteomes:UP000000768}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. BTx623 {ECO:0000313|Proteomes:UP000000768};
RX PubMed=19189423; DOI=10.1038/nature07723;
RA Paterson A.H., Bowers J.E., Bruggmann R., Dubchak I., Grimwood J.,
RA Gundlach H., Haberer G., Hellsten U., Mitros T., Poliakov A., Schmutz J.,
RA Spannagl M., Tang H., Wang X., Wicker T., Bharti A.K., Chapman J.,
RA Feltus F.A., Gowik U., Grigoriev I.V., Lyons E., Maher C.A., Martis M.,
RA Narechania A., Otillar R.P., Penning B.W., Salamov A.A., Wang Y., Zhang L.,
RA Carpita N.C., Freeling M., Gingle A.R., Hash C.T., Keller B., Klein P.,
RA Kresovich S., McCann M.C., Ming R., Peterson D.G., Mehboob-ur-Rahman,
RA Ware D., Westhoff P., Mayer K.F., Messing J., Rokhsar D.S.;
RT "The Sorghum bicolor genome and the diversification of grasses.";
RL Nature 457:551-556(2009).
RN [2] {ECO:0000313|Proteomes:UP000000768}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. BTx623 {ECO:0000313|Proteomes:UP000000768};
RX PubMed=29161754; DOI=10.1111/tpj.13781;
RA McCormick R.F., Truong S.K., Sreedasyam A., Jenkins J., Shu S., Sims D.,
RA Kennedy M., Amirebrahimi M., Weers B.D., McKinley B., Mattison A.,
RA Morishige D.T., Grimwood J., Schmutz J., Mullet J.E.;
RT "The Sorghum bicolor reference genome: improved assembly, gene annotations,
RT a transcriptome atlas, and signatures of genome organization.";
RL Plant J. 93:338-354(2018).
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DR EMBL; CM000764; OQU83380.1; -; Genomic_DNA.
DR AlphaFoldDB; A0A1Z5RHY6; -.
DR EnsemblPlants; OQU83380; OQU83380; SORBI_3005G110484.
DR Gramene; OQU83380; OQU83380; SORBI_3005G110484.
DR InParanoid; A0A1Z5RHY6; -.
DR Proteomes; UP000000768; Chromosome 5.
DR GO; GO:0005737; C:cytoplasm; IBA:GO_Central.
DR GO; GO:0003729; F:mRNA binding; IBA:GO_Central.
DR GO; GO:0003727; F:single-stranded RNA binding; IBA:GO_Central.
DR GO; GO:0045182; F:translation regulator activity; IBA:GO_Central.
DR GO; GO:0008270; F:zinc ion binding; IEA:InterPro.
DR GO; GO:2000767; P:positive regulation of cytoplasmic translation; IBA:GO_Central.
DR Gene3D; 4.10.60.10; Zinc finger, CCHC-type; 2.
DR InterPro; IPR001878; Znf_CCHC.
DR InterPro; IPR036875; Znf_CCHC_sf.
DR PANTHER; PTHR23002:SF89; CCHC-TYPE DOMAIN-CONTAINING PROTEIN; 1.
DR PANTHER; PTHR23002; ZINC FINGER CCHC DOMAIN CONTAINING PROTEIN; 1.
DR Pfam; PF00098; zf-CCHC; 1.
DR SMART; SM00343; ZnF_C2HC; 3.
DR SUPFAM; SSF57756; Retrovirus zinc finger-like domains; 2.
DR PROSITE; PS50158; ZF_CCHC; 1.
PE 4: Predicted;
KW Coiled coil {ECO:0000256|SAM:Coils};
KW Metal-binding {ECO:0000256|PROSITE-ProRule:PRU00047};
KW Reference proteome {ECO:0000313|Proteomes:UP000000768};
KW Zinc {ECO:0000256|PROSITE-ProRule:PRU00047};
KW Zinc-finger {ECO:0000256|PROSITE-ProRule:PRU00047}.
FT DOMAIN 568..582
FT /note="CCHC-type"
FT /evidence="ECO:0000259|PROSITE:PS50158"
FT REGION 132..188
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 545..565
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COILED 345..372
FT /evidence="ECO:0000256|SAM:Coils"
FT COMPBIAS 137..153
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 154..177
FT /note="Acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 642 AA; 72900 MW; 1EFDA2D346CC3252 CRC64;
MAAYGLDVEC PHIFDGTHFA RWRNWMQCNF KFISPQMWWI VDVGFSCAID KKVATQAQKK
CLHLDCQANN IFYSSMKDNI FGEIMDMKSA HEIWVFLNKK YGAISKEDDV PKVGTNEDVE
HDHNMVVVED CSTSLSSEED DDHSTRSLDK DDDDATSDAN DDATLCTLDD EDDGYESDAS
TSSSTTSPHC FMSHGDTKVS IGDVIADCDD PNFELVCRLT KALRNEMAKT SKLKNENSFL
KTTCEQQKHL LYVTTCSHEE LKLVHEELCV AHDNLVKDHA FLTKKLSNKE IKTSESSSLG
SNDQSYIVTN PCDVGKKHVS TSCNDLLSMP CSSHLDACST SMSCETNLLK ENNKLNEQVK
NLSNKLERCY NSRVTFEHIL KTQRNYGDKC GLGFKKKMTK GERKQEKRKL SHFMRYRCHE
VGHLANSCPN KEKLKKIKEE ERLKHVKCFK CRTWGHLTSM CPTKQLVKQQ VKPQLKPQDE
QEKKPQVQAK INHRGDDLIM KKKKTRRGGR ARHPMQIQDA KMMSKNDGHF ASKCPTKLEK
KAQATFKRQG NEKQHMSKEE KAQSKRSCYL CRERGHMAHS CPLGNNSKPI SIDDNTMLRK
DGDGTSTVAI AKHPATHTKA MPKYVAPNLR GPKLVWVPSK SG
//
