ID A0A1Z5RLP6_SORBI Unreviewed; 505 AA.
AC A0A1Z5RLP6;
DT 27-SEP-2017, integrated into UniProtKB/TrEMBL.
DT 27-SEP-2017, sequence version 1.
DT 13-SEP-2023, entry version 19.
DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:OQU84664.1};
GN ORFNames=SORBI_3004G098000 {ECO:0000313|EMBL:OQU84664.1};
OS Sorghum bicolor (Sorghum) (Sorghum vulgare).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; PACMAD clade;
OC Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum.
OX NCBI_TaxID=4558 {ECO:0000313|EMBL:OQU84664.1, ECO:0000313|Proteomes:UP000000768};
RN [1] {ECO:0000313|EMBL:OQU84664.1, ECO:0000313|Proteomes:UP000000768}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. BTx623 {ECO:0000313|Proteomes:UP000000768};
RX PubMed=19189423; DOI=10.1038/nature07723;
RA Paterson A.H., Bowers J.E., Bruggmann R., Dubchak I., Grimwood J.,
RA Gundlach H., Haberer G., Hellsten U., Mitros T., Poliakov A., Schmutz J.,
RA Spannagl M., Tang H., Wang X., Wicker T., Bharti A.K., Chapman J.,
RA Feltus F.A., Gowik U., Grigoriev I.V., Lyons E., Maher C.A., Martis M.,
RA Narechania A., Otillar R.P., Penning B.W., Salamov A.A., Wang Y., Zhang L.,
RA Carpita N.C., Freeling M., Gingle A.R., Hash C.T., Keller B., Klein P.,
RA Kresovich S., McCann M.C., Ming R., Peterson D.G., Mehboob-ur-Rahman,
RA Ware D., Westhoff P., Mayer K.F., Messing J., Rokhsar D.S.;
RT "The Sorghum bicolor genome and the diversification of grasses.";
RL Nature 457:551-556(2009).
RN [2] {ECO:0000313|Proteomes:UP000000768}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. BTx623 {ECO:0000313|Proteomes:UP000000768};
RX PubMed=29161754; DOI=10.1111/tpj.13781;
RA McCormick R.F., Truong S.K., Sreedasyam A., Jenkins J., Shu S., Sims D.,
RA Kennedy M., Amirebrahimi M., Weers B.D., McKinley B., Mattison A.,
RA Morishige D.T., Grimwood J., Schmutz J., Mullet J.E.;
RT "The Sorghum bicolor reference genome: improved assembly, gene annotations,
RT a transcriptome atlas, and signatures of genome organization.";
RL Plant J. 93:338-354(2018).
CC -!- COFACTOR:
CC Name=Zn(2+); Xref=ChEBI:CHEBI:29105;
CC Evidence={ECO:0000256|ARBA:ARBA00001947};
CC -!- SIMILARITY: Belongs to the endoribonuclease YbeY family.
CC {ECO:0000256|ARBA:ARBA00010875}.
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DR EMBL; CM000763; OQU84664.1; -; Genomic_DNA.
DR AlphaFoldDB; A0A1Z5RLP6; -.
DR EnsemblPlants; OQU84664; OQU84664; SORBI_3004G098000.
DR Gramene; OQU84664; OQU84664; SORBI_3004G098000.
DR OMA; HLENSEY; -.
DR Proteomes; UP000000768; Chromosome 4.
DR ExpressionAtlas; A0A1Z5RLP6; baseline and differential.
DR GO; GO:0004519; F:endonuclease activity; IEA:UniProtKB-KW.
DR GO; GO:0046872; F:metal ion binding; IEA:UniProtKB-KW.
DR GO; GO:0004222; F:metalloendopeptidase activity; IEA:InterPro.
DR GO; GO:0006364; P:rRNA processing; IEA:InterPro.
DR Gene3D; 3.40.50.1000; HAD superfamily/HAD-like; 1.
DR Gene3D; 3.40.390.30; Metalloproteases ('zincins'), catalytic domain; 1.
DR HAMAP; MF_00009; Endoribonucl_YbeY; 1.
DR InterPro; IPR036412; HAD-like_sf.
DR InterPro; IPR023214; HAD_sf.
DR InterPro; IPR023091; MetalPrtase_cat_dom_sf_prd.
DR InterPro; IPR002036; YbeY.
DR InterPro; IPR020549; YbeY_CS.
DR NCBIfam; TIGR00043; rRNA maturation RNase YbeY; 1.
DR PANTHER; PTHR46986; ENDORIBONUCLEASE YBEY, CHLOROPLASTIC; 1.
DR PANTHER; PTHR46986:SF2; OS02G0227000 PROTEIN; 1.
DR Pfam; PF08282; Hydrolase_3; 1.
DR Pfam; PF02130; YbeY; 1.
DR SUPFAM; SSF56784; HAD-like; 1.
DR SUPFAM; SSF55486; Metalloproteases ('zincins'), catalytic domain; 1.
DR PROSITE; PS01306; UPF0054; 1.
PE 3: Inferred from homology;
KW Endonuclease {ECO:0000256|ARBA:ARBA00022759};
KW Hydrolase {ECO:0000256|ARBA:ARBA00022801};
KW Metal-binding {ECO:0000256|ARBA:ARBA00022723};
KW Nuclease {ECO:0000256|ARBA:ARBA00022722};
KW Reference proteome {ECO:0000313|Proteomes:UP000000768};
KW Zinc {ECO:0000256|ARBA:ARBA00022833}.
FT REGION 61..92
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 73..87
FT /note="Basic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 505 AA; 56440 MW; 33CE58C90AF578C8 CRC64;
MVRLHQLLSR ALASHQILPC TTSGVRSTPR LLLRPRSPPP APPPHGRTLL PIIVAASRQY
ASSTFGRRRR SSRPPVLLGR KRARRPTRKG PGELSVQIGI EEALPDDPEI LGIAETLRTD
VGKAVKLALN DLEGSDYITR DPSVCNVNKY ASIEVSLLLC DDDFIRKLNK EWRDEDHATD
VLSMSQHIPE LDIPILQLGD IVISVETARR QAEERGHTLL DEIRILMVHG LLHLLGFDHE
VSKVAEEEME KEEEHILNTL EWSGKGLIKS AYDIATGMEH LQNSVEADSS IEEAILQEKH
QAKLSHIICD IDGTIVDYEG GLHEKSIGSL REAIAMGVNI IMVTRKGSLV YGRDGKEVYR
AELDLDVCKE ALLYSLKHKI PLVAYCEEQG LTLFEHPFVD LLHTVHNENK VKVMHSIEDL
LECSSIQKLL LFDSTKEDSS ALRQHCSELT KGKAHVIKMH QDTIDIVPLN ASKSGGLRIL
LDHLGITKDC DLDAVGDYTR WLSNK
//