ID A0A1Z5SA45_SORBI Unreviewed; 1518 AA.
AC A0A1Z5SA45;
DT 27-SEP-2017, integrated into UniProtKB/TrEMBL.
DT 27-SEP-2017, sequence version 1.
DT 27-MAR-2024, entry version 25.
DE RecName: Full=Pre-mRNA polyadenylation factor Fip1 domain-containing protein {ECO:0000259|Pfam:PF05182};
GN ORFNames=SORBI_3001G394800 {ECO:0000313|EMBL:OQU92709.1};
OS Sorghum bicolor (Sorghum) (Sorghum vulgare).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; PACMAD clade;
OC Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum.
OX NCBI_TaxID=4558 {ECO:0000313|EMBL:OQU92709.1, ECO:0000313|Proteomes:UP000000768};
RN [1] {ECO:0000313|EMBL:OQU92709.1, ECO:0000313|Proteomes:UP000000768}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. BTx623 {ECO:0000313|Proteomes:UP000000768};
RX PubMed=19189423; DOI=10.1038/nature07723;
RA Paterson A.H., Bowers J.E., Bruggmann R., Dubchak I., Grimwood J.,
RA Gundlach H., Haberer G., Hellsten U., Mitros T., Poliakov A., Schmutz J.,
RA Spannagl M., Tang H., Wang X., Wicker T., Bharti A.K., Chapman J.,
RA Feltus F.A., Gowik U., Grigoriev I.V., Lyons E., Maher C.A., Martis M.,
RA Narechania A., Otillar R.P., Penning B.W., Salamov A.A., Wang Y., Zhang L.,
RA Carpita N.C., Freeling M., Gingle A.R., Hash C.T., Keller B., Klein P.,
RA Kresovich S., McCann M.C., Ming R., Peterson D.G., Mehboob-ur-Rahman,
RA Ware D., Westhoff P., Mayer K.F., Messing J., Rokhsar D.S.;
RT "The Sorghum bicolor genome and the diversification of grasses.";
RL Nature 457:551-556(2009).
RN [2] {ECO:0000313|Proteomes:UP000000768}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. BTx623 {ECO:0000313|Proteomes:UP000000768};
RX PubMed=29161754; DOI=10.1111/tpj.13781;
RA McCormick R.F., Truong S.K., Sreedasyam A., Jenkins J., Shu S., Sims D.,
RA Kennedy M., Amirebrahimi M., Weers B.D., McKinley B., Mattison A.,
RA Morishige D.T., Grimwood J., Schmutz J., Mullet J.E.;
RT "The Sorghum bicolor reference genome: improved assembly, gene annotations,
RT a transcriptome atlas, and signatures of genome organization.";
RL Plant J. 93:338-354(2018).
CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|ARBA:ARBA00004123}.
CC -!- SIMILARITY: Belongs to the FIP1 family.
CC {ECO:0000256|ARBA:ARBA00007459}.
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DR EMBL; CM000760; OQU92709.1; -; Genomic_DNA.
DR STRING; 4558.A0A1Z5SA45; -.
DR EnsemblPlants; OQU92709; OQU92709; SORBI_3001G394800.
DR Gramene; OQU92709; OQU92709; SORBI_3001G394800.
DR eggNOG; ENOG502SC3K; Eukaryota.
DR InParanoid; A0A1Z5SA45; -.
DR Proteomes; UP000000768; Chromosome 1.
DR ExpressionAtlas; A0A1Z5SA45; baseline and differential.
DR GO; GO:0009507; C:chloroplast; IBA:GO_Central.
DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
DR GO; GO:0003729; F:mRNA binding; IEA:InterPro.
DR GO; GO:0003727; F:single-stranded RNA binding; IBA:GO_Central.
DR GO; GO:0006397; P:mRNA processing; IBA:GO_Central.
DR GO; GO:0006417; P:regulation of translation; IBA:GO_Central.
DR Gene3D; 1.25.40.10; Tetratricopeptide repeat domain; 2.
DR InterPro; IPR007854; Fip1_dom.
DR InterPro; IPR003107; HAT.
DR InterPro; IPR044624; Mbb1-like.
DR InterPro; IPR011990; TPR-like_helical_dom_sf.
DR InterPro; IPR019734; TPR_repeat.
DR PANTHER; PTHR44917; PROTEIN HIGH CHLOROPHYLL FLUORESCENT 107; 1.
DR PANTHER; PTHR44917:SF1; PROTEIN HIGH CHLOROPHYLL FLUORESCENT 107; 1.
DR Pfam; PF05182; Fip1; 1.
DR Pfam; PF13432; TPR_16; 1.
DR SMART; SM00386; HAT; 9.
DR SMART; SM00028; TPR; 9.
DR SUPFAM; SSF48452; TPR-like; 2.
DR PROSITE; PS50005; TPR; 1.
PE 3: Inferred from homology;
KW mRNA processing {ECO:0000256|ARBA:ARBA00022664};
KW Nucleus {ECO:0000256|ARBA:ARBA00023242};
KW Reference proteome {ECO:0000313|Proteomes:UP000000768};
KW TPR repeat {ECO:0000256|PROSITE-ProRule:PRU00339}.
FT DOMAIN 28..63
FT /note="Pre-mRNA polyadenylation factor Fip1"
FT /evidence="ECO:0000259|Pfam:PF05182"
FT REPEAT 1147..1180
FT /note="TPR"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00339"
FT REGION 184..225
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 266..285
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 319..386
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 525..544
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 708..749
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 949..968
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 1414..1472
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 1488..1518
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 184..213
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 319..369
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 370..386
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 708..726
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 1414..1467
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 1518 AA; 172778 MW; 5FD9D50946527F06 CRC64;
MGQIDRGHQH VFQRDYNFSL PRNGTIFDID IEAFQQKPWR QQGVDLTDYF NFSLDEEGWR
KYWCSMLSTT LLFVQKKLRL GARSLVNETS GLEQESYKLK SVKAMSKVAN GSGSEGRNGL
GKPKGRAIHV EGSACERVPS ADLWRPIQRD SDVVIQVNMT LSPSNHSTLD DSSKLNHKGV
ATERVVDKEV HDGGSSEGVG SKLDRRDSYF ARDQSRSPDY SDMLSGESKE NLYFKRSDRH
SDFRDFFEDT KLKDEHVKFD FNCYSSRSDR EDSESCSRGY TPSADDRKVS SKLLWRGEAP
FAGQDKSSKL FVGCNSDRDV KSRHETRKGQ RRHNLDDRRN AIFVEKEKPT DSYPSRYDRK
YEKRRSSSSS LRTNYHNSVR NQSYEQRYSP LERIALKNDE HYFSNESNYH RRQSLSCDIS
EGEDVDECFS SANEWQRDRD HIYHSMVKTD MPDADDGQMY RERYSQEKRR AIHDRSMDVE
FSHYTDYRIC EWQSPVRGRY RDKGRFAKSN DWHFRHANHL ELYPGLNNSE RDRPATGFSS
MSSRSRCINN KKVRNAKMAQ NDCHGYHQKN KQHDSSFCIG NSRSALRTDT FAETGRFVLP
IKRKLHSDLG SVDQKTLADL PLLKGRRLMH GQSIVSDRRI YALKLHKSTE KINTEAICSS
LDMRNSNTVS NICVGRRHEL DNADNIHLND RKIKFERQGN ELRRVIENNQ KGHHPVDRDL
HASGHKHVHQ KPWKQNMGHH HSGNQDLDKS ADQKWLNEDV EVEEGELIEE DHHDIISKSK
LKPRNVVLKS VIETGSAEQL QVNNTMSKDA ACNNRATREC DDKHILEAGK CFHVYNLRSA
VSRCPVHSVC DCEREERTFG LVRRRTRDQL HCQENLKKAE TTRWCSLPTR GVGKRSTRAR
PASMAMRLLS PSTPPPLFPS PGPKAPASVS ASSSSYLSVR LRRARAASAA SGAAASGGSD
RDGGRFEGEA MSGAFDRGLA EIARKVPLFE PAADGELAAA AGERPLPINL ELWLYRVKVH
TRKFEFPEAE KLLDKCISFW PEDGRPYVAL GKLFSKQSRY DKARAVYERG CQATQGENPY
IWQCWAVLES KGGNIRRARE LFDAATVADA KHIAAWHGWA ILEIKQGNIK KARNLLGKAL
KYCGGNEYIY QTLALLEAKA ERFEQARTLF EQATQSNPKS CASWLAWAQV EMRAGNNTMA
RNLFEKAVQA SPKNRFSWHV WALFEANEGN IDSARKLLKI GHAVNPKDPV ILQSLALLEY
NFSSANVARV LFRKASQIDP RHQPVWIAWG WMEWKEGNAR TARALYQRAL SVNSTNECAA
RCLQAWGVLE QRAGNYTAAR RLLRSSLNIN SQSEVTWMTW AALEEEQGDP VRAEEIRNLY
FQQRTEVVDD ASWVMGFLDI IDPALDSVKK LLNLDQPSGP TRQDDVKSTA RSSAARESSE
TSAAVGSDTP GLTSNDAGNN GREATRTPTN DFDLDRFIKK RLALDPAELD AVLEGSDPRG
VVSQRRKQRL PRKPLPVP
//
