ID A0A226MKB5_CALSU Unreviewed; 390 AA.
AC A0A226MKB5;
DT 25-OCT-2017, integrated into UniProtKB/TrEMBL.
DT 25-OCT-2017, sequence version 1.
DT 24-JAN-2024, entry version 14.
DE RecName: Full=Syndecan {ECO:0000256|RuleBase:RU000649};
GN ORFNames=ASZ78_015638 {ECO:0000313|EMBL:OXB55743.1};
OS Callipepla squamata (Scaled quail).
OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
OC Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Odontophoridae;
OC Callipepla.
OX NCBI_TaxID=9009 {ECO:0000313|EMBL:OXB55743.1, ECO:0000313|Proteomes:UP000198323};
RN [1] {ECO:0000313|EMBL:OXB55743.1, ECO:0000313|Proteomes:UP000198323}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=Texas {ECO:0000313|EMBL:OXB55743.1,
RC ECO:0000313|Proteomes:UP000198323};
RC TISSUE=Leg muscle {ECO:0000313|EMBL:OXB55743.1};
RA Oldeschulte D.L., Halley Y.A., Bhattarai E.K., Brashear W.A., Hill J.,
RA Metz R.P., Johnson C.D., Rollins D., Peterson M.J., Bickhart D.M.,
RA Decker J.E., Seabury C.M.;
RT "Disparate Historic Effective Population Sizes Predicted by Modern Levels
RT of Genome Diversity for the Scaled Quail (Callipepla squamata) and the
RT Northern Bobwhite (Colinus virginianus): Inferences from First and Second
RT Generation Draft Genome Assemblies for Sympatric New World Quail.";
RL Submitted (JUL-2016) to the EMBL/GenBank/DDBJ databases.
CC -!- FUNCTION: Cell surface proteoglycan. {ECO:0000256|RuleBase:RU000649}.
CC -!- SUBCELLULAR LOCATION: Membrane {ECO:0000256|ARBA:ARBA00004479,
CC ECO:0000256|RuleBase:RU000649}; Single-pass type I membrane protein
CC {ECO:0000256|ARBA:ARBA00004479, ECO:0000256|RuleBase:RU000649}.
CC -!- SIMILARITY: Belongs to the syndecan proteoglycan family.
CC {ECO:0000256|ARBA:ARBA00005343, ECO:0000256|RuleBase:RU000649}.
CC -!- CAUTION: The sequence shown here is derived from an EMBL/GenBank/DDBJ
CC whole genome shotgun (WGS) entry which is preliminary data.
CC {ECO:0000313|EMBL:OXB55743.1}.
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DR EMBL; MCFN01000704; OXB55743.1; -; Genomic_DNA.
DR AlphaFoldDB; A0A226MKB5; -.
DR STRING; 9009.A0A226MKB5; -.
DR Proteomes; UP000198323; Unassembled WGS sequence.
DR GO; GO:0016020; C:membrane; IEA:UniProtKB-SubCell.
DR InterPro; IPR003585; Neurexin-like.
DR InterPro; IPR001050; Syndecan.
DR InterPro; IPR027789; Syndecan/Neurexin_dom.
DR InterPro; IPR030479; Syndecan_CS.
DR PANTHER; PTHR10915; SYNDECAN; 1.
DR PANTHER; PTHR10915:SF7; SYNDECAN-3; 1.
DR Pfam; PF01034; Syndecan; 1.
DR SMART; SM00294; 4.1m; 1.
DR PROSITE; PS00964; SYNDECAN; 1.
PE 3: Inferred from homology;
KW Glycoprotein {ECO:0000256|ARBA:ARBA00023180,
KW ECO:0000256|RuleBase:RU000649};
KW Heparan sulfate {ECO:0000256|ARBA:ARBA00023207,
KW ECO:0000256|RuleBase:RU000649};
KW Membrane {ECO:0000256|ARBA:ARBA00023136, ECO:0000256|SAM:Phobius};
KW Proteoglycan {ECO:0000256|ARBA:ARBA00022974,
KW ECO:0000256|RuleBase:RU000649};
KW Reference proteome {ECO:0000313|Proteomes:UP000198323};
KW Transmembrane {ECO:0000256|ARBA:ARBA00022692,
KW ECO:0000256|RuleBase:RU000649};
KW Transmembrane helix {ECO:0000256|ARBA:ARBA00022989,
KW ECO:0000256|SAM:Phobius}.
FT TRANSMEM 333..357
FT /note="Helical"
FT /evidence="ECO:0000256|SAM:Phobius"
FT DOMAIN 356..374
FT /note="Neurexin/syndecan/glycophorin C"
FT /evidence="ECO:0000259|SMART:SM00294"
FT REGION 122..144
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 176..285
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 176..243
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 390 AA; 41721 MW; C0B0308FE2CFE32E CRC64;
MQLLAWLQAQ RWRNENYERP VDLEGSGDDD PFGDDELDDI YSGSGSGYFE QESGLETAVS
LTTDTSIPLP TTVAMLPVTL VQPMATPFEL FPTEDTSPEQ PTSVLYIPKI TEAPVIPSWK
ATTTSTTTSD SPSTTATTTA ATTTTTTTTI STTMAATKPT TTQRFLPPFV TKAATTQATT
LETPTTSIPE TSVPTEVTTS RLVPSSTAKP RSLPKPSTSR TSEPTEKSTT LPSSPTTLSP
TEAPQVEPGE LMTVLDSDLE VPTSSGPSGD FEIQEEEETT RSELGNEVVA VVTPPAAPGL
GKNAEPGLID NTIESGSSAA QLPQKNILER KEVLIAVIVG GVVGALFAAF LVMLLIYRMK
KKDEGSYTLE EPKQANVTYQ KPDKQEEFYA
//