ID A0A226N7Y4_CALSU Unreviewed; 885 AA.
AC A0A226N7Y4;
DT 25-OCT-2017, integrated into UniProtKB/TrEMBL.
DT 25-OCT-2017, sequence version 1.
DT 27-MAR-2024, entry version 18.
DE RecName: Full=IF rod domain-containing protein {ECO:0000259|PROSITE:PS51842};
GN ORFNames=ASZ78_009018 {ECO:0000313|EMBL:OXB63703.1};
OS Callipepla squamata (Scaled quail).
OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
OC Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Odontophoridae;
OC Callipepla.
OX NCBI_TaxID=9009 {ECO:0000313|EMBL:OXB63703.1, ECO:0000313|Proteomes:UP000198323};
RN [1] {ECO:0000313|EMBL:OXB63703.1, ECO:0000313|Proteomes:UP000198323}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=Texas {ECO:0000313|EMBL:OXB63703.1,
RC ECO:0000313|Proteomes:UP000198323};
RC TISSUE=Leg muscle {ECO:0000313|EMBL:OXB63703.1};
RA Oldeschulte D.L., Halley Y.A., Bhattarai E.K., Brashear W.A., Hill J.,
RA Metz R.P., Johnson C.D., Rollins D., Peterson M.J., Bickhart D.M.,
RA Decker J.E., Seabury C.M.;
RT "Disparate Historic Effective Population Sizes Predicted by Modern Levels
RT of Genome Diversity for the Scaled Quail (Callipepla squamata) and the
RT Northern Bobwhite (Colinus virginianus): Inferences from First and Second
RT Generation Draft Genome Assemblies for Sympatric New World Quail.";
RL Submitted (JUL-2016) to the EMBL/GenBank/DDBJ databases.
CC -!- SIMILARITY: Belongs to the intermediate filament family.
CC {ECO:0000256|RuleBase:RU000685}.
CC -!- CAUTION: The sequence shown here is derived from an EMBL/GenBank/DDBJ
CC whole genome shotgun (WGS) entry which is preliminary data.
CC {ECO:0000313|EMBL:OXB63703.1}.
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DR EMBL; MCFN01000151; OXB63703.1; -; Genomic_DNA.
DR AlphaFoldDB; A0A226N7Y4; -.
DR STRING; 9009.A0A226N7Y4; -.
DR Proteomes; UP000198323; Unassembled WGS sequence.
DR GO; GO:0005882; C:intermediate filament; IEA:UniProtKB-KW.
DR GO; GO:0005198; F:structural molecule activity; IEA:InterPro.
DR Gene3D; 1.20.5.170; -; 2.
DR Gene3D; 1.20.5.500; Single helix bin; 2.
DR Gene3D; 1.20.5.1160; Vasodilator-stimulated phosphoprotein; 2.
DR InterPro; IPR018039; IF_conserved.
DR InterPro; IPR039008; IF_rod_dom.
DR InterPro; IPR002957; Keratin_I.
DR PANTHER; PTHR23239; INTERMEDIATE FILAMENT; 1.
DR PANTHER; PTHR23239:SF368; KERATIN, TYPE I CYTOSKELETAL 14; 1.
DR Pfam; PF00038; Filament; 2.
DR PRINTS; PR01248; TYPE1KERATIN.
DR SMART; SM01391; Filament; 2.
DR SUPFAM; SSF64593; Intermediate filament protein, coiled coil region; 4.
DR SUPFAM; SSF46579; Prefoldin; 2.
DR PROSITE; PS00226; IF_ROD_1; 2.
DR PROSITE; PS51842; IF_ROD_2; 2.
PE 3: Inferred from homology;
KW Coiled coil {ECO:0000256|ARBA:ARBA00023054, ECO:0000256|SAM:Coils};
KW Intermediate filament {ECO:0000256|ARBA:ARBA00022754,
KW ECO:0000256|RuleBase:RU000685};
KW Reference proteome {ECO:0000313|Proteomes:UP000198323}.
FT DOMAIN 101..413
FT /note="IF rod"
FT /evidence="ECO:0000259|PROSITE:PS51842"
FT DOMAIN 568..880
FT /note="IF rod"
FT /evidence="ECO:0000259|PROSITE:PS51842"
FT COILED 105..139
FT /evidence="ECO:0000256|SAM:Coils"
FT COILED 212..391
FT /evidence="ECO:0000256|SAM:Coils"
FT COILED 572..606
FT /evidence="ECO:0000256|SAM:Coils"
FT COILED 679..858
FT /evidence="ECO:0000256|SAM:Coils"
SQ SEQUENCE 885 AA; 97103 MW; 8292496B19AFCAC1 CRC64;
MSSVSSGRYT SCGIGGSRGF SGRSYCSAVN YGGGLSTGSL VGGNYGGGLG AAVLGGCSGI
GFSGGSARFG GGIGGGLGIG LGGGVVGGGF AGDGILLSGD EKVTMQNLND RLASYLDKVR
CLEQENADLE CRIREWYAKQ GPFCEPRDYS CYYKEIEDLQ NQIVCATIDN NKIILNIDNS
RMTADDFRVK YETELALRQS VEADINGLRQ VLDQLTLCRS DLEAQLESLR EELCCLKKNH
EEEMNCLRKQ STGDVSVEVN ACPGPDLRKI LEEMRCQYET LIERNRKEVE DWYECKIEEV
NREVITSGQE VETCNNQVTE LRRQLQALEI DLQAQLSQRD NLESSLAETE CRYNNHLGEL
QTQITCVEQQ LADLRAEMEC QNQEYKILLD VKCRLEQEIH TYRCLLEGGQ QDLIQQGGIG
QLSGLGGGVA RTGGIGGGGI IRTSHTYTSS AQMPSCAAAE IQAAVAMSCN IKETITVSSK
GRSSGGSCII GGGGGARISS YAIGSGRGFS GRSYCGGVNY GGGLSVGSLA GGSYGGGSCY
GNGLGFGLGG GVVVGGLGGD CLLSSCDEKV TMQNLNDRLA SYLDKVKCLE KENAELECRI
REWYATQGLS CEPRDYSCYY KEIEDLQNQI VCATIDNNKI ILDIDNSRMA ADDFRVKYET
ELALRQSVEA DINGLRQVLD QLTLCRSDLE AQLESLREEL CCLKKNHEEE MNCLRKQSTG
DVSVEVNACP GPDLRQILED LRCQYETLIA RNRKEVEDWY ECKIEEVNRE VITSGQEVET
CNNQVTELRR QLQALEIDLQ AQLSQRNNLE SSLAETECQY NTLLGELQTQ ITCVEQQLAE
IRAEIECQNQ EYKTLLDVKC RLEQEIQTYR CLLEGGQQDL MYVDL
//
