ID A0A227PCY3_9FLAO Unreviewed; 486 AA.
AC A0A227PCY3;
DT 25-OCT-2017, integrated into UniProtKB/TrEMBL.
DT 25-OCT-2017, sequence version 1.
DT 24-JAN-2024, entry version 27.
DE SubName: Full=RNA polymerase sigma-54 factor {ECO:0000313|EMBL:OXG07769.1};
GN ORFNames=B0A64_07920 {ECO:0000313|EMBL:OXG07769.1};
OS Flavobacterium araucananum.
OC Bacteria; Bacteroidota; Flavobacteriia; Flavobacteriales;
OC Flavobacteriaceae; Flavobacterium.
OX NCBI_TaxID=946678 {ECO:0000313|EMBL:OXG07769.1, ECO:0000313|Proteomes:UP000214684};
RN [1] {ECO:0000313|EMBL:OXG07769.1, ECO:0000313|Proteomes:UP000214684}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=DSM 24704 {ECO:0000313|EMBL:OXG07769.1,
RC ECO:0000313|Proteomes:UP000214684};
RA Stine C., Li C., Tadesse D.;
RT "Whole genomes of Flavobacteriaceae.";
RL Submitted (NOV-2016) to the EMBL/GenBank/DDBJ databases.
CC -!- SIMILARITY: Belongs to the sigma-54 factor family.
CC {ECO:0000256|ARBA:ARBA00008798}.
CC -!- CAUTION: The sequence shown here is derived from an EMBL/GenBank/DDBJ
CC whole genome shotgun (WGS) entry which is preliminary data.
CC {ECO:0000313|EMBL:OXG07769.1}.
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DR EMBL; MUGS01000009; OXG07769.1; -; Genomic_DNA.
DR AlphaFoldDB; A0A227PCY3; -.
DR OrthoDB; 9814402at2; -.
DR Proteomes; UP000214684; Unassembled WGS sequence.
DR GO; GO:0000428; C:DNA-directed RNA polymerase complex; IEA:UniProtKB-KW.
DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW.
DR GO; GO:0001216; F:DNA-binding transcription activator activity; IEA:InterPro.
DR GO; GO:0016779; F:nucleotidyltransferase activity; IEA:UniProtKB-KW.
DR GO; GO:0016987; F:sigma factor activity; IEA:UniProtKB-KW.
DR GO; GO:0006352; P:DNA-templated transcription initiation; IEA:InterPro.
DR Gene3D; 1.10.10.60; Homeodomain-like; 1.
DR Gene3D; 1.10.10.1330; RNA polymerase sigma-54 factor, core-binding domain; 1.
DR InterPro; IPR000394; RNA_pol_sigma_54.
DR InterPro; IPR007046; RNA_pol_sigma_54_core-bd.
DR InterPro; IPR007634; RNA_pol_sigma_54_DNA-bd.
DR InterPro; IPR038709; RpoN_core-bd_sf.
DR NCBIfam; TIGR02395; rpoN_sigma; 1.
DR PANTHER; PTHR32248; RNA POLYMERASE SIGMA-54 FACTOR; 1.
DR PANTHER; PTHR32248:SF4; RNA POLYMERASE SIGMA-54 FACTOR; 1.
DR Pfam; PF00309; Sigma54_AID; 1.
DR Pfam; PF04963; Sigma54_CBD; 1.
DR Pfam; PF04552; Sigma54_DBD; 1.
DR PIRSF; PIRSF000774; RpoN; 1.
DR PRINTS; PR00045; SIGMA54FCT.
DR PROSITE; PS00718; SIGMA54_2; 1.
DR PROSITE; PS50044; SIGMA54_3; 1.
PE 3: Inferred from homology;
KW DNA-binding {ECO:0000256|ARBA:ARBA00023125};
KW DNA-directed RNA polymerase {ECO:0000256|ARBA:ARBA00022478};
KW Nucleotidyltransferase {ECO:0000256|ARBA:ARBA00022695};
KW Sigma factor {ECO:0000256|ARBA:ARBA00023082};
KW Transcription {ECO:0000256|ARBA:ARBA00023163};
KW Transcription regulation {ECO:0000256|ARBA:ARBA00023015};
KW Transferase {ECO:0000256|ARBA:ARBA00022679}.
FT DOMAIN 112..304
FT /note="RNA polymerase sigma factor 54 core-binding"
FT /evidence="ECO:0000259|Pfam:PF04963"
FT DOMAIN 326..485
FT /note="RNA polymerase sigma factor 54 DNA-binding"
FT /evidence="ECO:0000259|Pfam:PF04552"
SQ SEQUENCE 486 AA; 56231 MW; FEA3CC55E94BBB57 CRC64;
MLKQFLNLKL SQKLSPQQIQ LMKLIQLPTQ AFEQRLLEEM NENPALEAGK EEEYEADEFA
NEEYDDYDDA EGDRIEADDI NIDEYLSDDD TPDYKTQVNN YSEDEERETP FASPISFHQD
LINQLNTFIL NDEEREIAEF LVGSIDDMGY IRRSVPDIVD DMAFTQGIYT DDKMVEKMLQ
VIHELEPSGV GARDLQECLL LQLKHKTPTE YVDLAIDIIE NQFDAFTKKH YDKLLQKYGV
SNEQLKKAIH EIERLNPKPG GSFTGNNKVT ENVVPDFAIR IVDGELELTL NGRNAPSLHV
SKDYQEMMQT YKDSRDKSSA QKDAVQFIKQ KLDSAKWFID AIRQRQETLF VTMNAIMHYQ
EEFFLDGDET KLKPMILKDI ADMVGLDIST ISRVANSKYV ETPYGTKLIK EFFSEAMKND
QGEDVSTLEI KKILKNTIEE EDKKKPLPDD QLADILKEKG YPIARRTIAK YREQLDIPVA
RMRKKI
//
