ID A0A238X3M8_9RHOB Unreviewed; 759 AA.
AC A0A238X3M8;
DT 25-OCT-2017, integrated into UniProtKB/TrEMBL.
DT 25-OCT-2017, sequence version 1.
DT 27-MAR-2024, entry version 22.
DE SubName: Full=Malate dehydrogenase (Oxaloacetate-decarboxylating)(NADP+) {ECO:0000313|EMBL:SNR52449.1};
GN ORFNames=SAMN06265378_10745 {ECO:0000313|EMBL:SNR52449.1};
OS Paracoccus sediminis.
OC Bacteria; Pseudomonadota; Alphaproteobacteria; Rhodobacterales;
OC Paracoccaceae; Paracoccus.
OX NCBI_TaxID=1214787 {ECO:0000313|EMBL:SNR52449.1, ECO:0000313|Proteomes:UP000198409};
RN [1] {ECO:0000313|Proteomes:UP000198409}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=DSM 26170 {ECO:0000313|Proteomes:UP000198409};
RA Varghese N., Submissions S.;
RL Submitted (JUN-2017) to the EMBL/GenBank/DDBJ databases.
CC -!- COFACTOR:
CC Name=Mg(2+); Xref=ChEBI:CHEBI:18420;
CC Evidence={ECO:0000256|ARBA:ARBA00001946};
CC -!- SIMILARITY: In the N-terminal section; belongs to the malic enzymes
CC family. {ECO:0000256|ARBA:ARBA00007686}.
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DR EMBL; FZNM01000007; SNR52449.1; -; Genomic_DNA.
DR AlphaFoldDB; A0A238X3M8; -.
DR OrthoDB; 9805787at2; -.
DR Proteomes; UP000198409; Unassembled WGS sequence.
DR GO; GO:0016746; F:acyltransferase activity; IEA:InterPro.
DR GO; GO:0004470; F:malic enzyme activity; IEA:InterPro.
DR GO; GO:0046872; F:metal ion binding; IEA:UniProtKB-KW.
DR GO; GO:0051287; F:NAD binding; IEA:InterPro.
DR GO; GO:0016616; F:oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor; IEA:InterPro.
DR GO; GO:0006108; P:malate metabolic process; IEA:InterPro.
DR CDD; cd05311; NAD_bind_2_malic_enz; 1.
DR Gene3D; 3.40.50.10950; -; 1.
DR Gene3D; 3.40.50.10750; Isocitrate/Isopropylmalate dehydrogenase-like; 1.
DR Gene3D; 3.40.50.10380; Malic enzyme, N-terminal domain; 1.
DR Gene3D; 3.40.50.720; NAD(P)-binding Rossmann-like Domain; 1.
DR InterPro; IPR046346; Aminoacid_DH-like_N_sf.
DR InterPro; IPR012301; Malic_N_dom.
DR InterPro; IPR037062; Malic_N_dom_sf.
DR InterPro; IPR012302; Malic_NAD-bd.
DR InterPro; IPR045213; Malic_NAD-bd_bact_type.
DR InterPro; IPR012188; ME_PTA.
DR InterPro; IPR036291; NAD(P)-bd_dom_sf.
DR InterPro; IPR042113; P_AcTrfase_dom1.
DR InterPro; IPR042112; P_AcTrfase_dom2.
DR InterPro; IPR002505; PTA_PTB.
DR PANTHER; PTHR43237; NADP-DEPENDENT MALIC ENZYME; 1.
DR PANTHER; PTHR43237:SF4; NADP-DEPENDENT MALIC ENZYME; 1.
DR Pfam; PF00390; malic; 1.
DR Pfam; PF03949; Malic_M; 1.
DR Pfam; PF01515; PTA_PTB; 1.
DR PIRSF; PIRSF036684; ME_PTA; 1.
DR SMART; SM01274; malic; 1.
DR SMART; SM00919; Malic_M; 1.
DR SUPFAM; SSF53223; Aminoacid dehydrogenase-like, N-terminal domain; 1.
DR SUPFAM; SSF53659; Isocitrate/Isopropylmalate dehydrogenase-like; 1.
DR SUPFAM; SSF51735; NAD(P)-binding Rossmann-fold domains; 1.
PE 3: Inferred from homology;
KW Metal-binding {ECO:0000256|PIRSR:PIRSR036684-2};
KW Multifunctional enzyme {ECO:0000256|ARBA:ARBA00023268};
KW NADP {ECO:0000256|PIRSR:PIRSR036684-3};
KW Oxidoreductase {ECO:0000256|ARBA:ARBA00023002}.
FT DOMAIN 22..155
FT /note="Malic enzyme N-terminal"
FT /evidence="ECO:0000259|SMART:SM01274"
FT DOMAIN 167..404
FT /note="Malic enzyme NAD-binding"
FT /evidence="ECO:0000259|SMART:SM00919"
FT ACT_SITE 98
FT /note="Proton acceptor"
FT /evidence="ECO:0000256|PIRSR:PIRSR036684-1"
FT BINDING 80..87
FT /ligand="NADP(+)"
FT /ligand_id="ChEBI:CHEBI:58349"
FT /evidence="ECO:0000256|PIRSR:PIRSR036684-3"
FT BINDING 140
FT /ligand="a divalent metal cation"
FT /ligand_id="ChEBI:CHEBI:60240"
FT /evidence="ECO:0000256|PIRSR:PIRSR036684-2"
FT BINDING 141
FT /ligand="a divalent metal cation"
FT /ligand_id="ChEBI:CHEBI:60240"
FT /evidence="ECO:0000256|PIRSR:PIRSR036684-2"
FT BINDING 166
FT /ligand="a divalent metal cation"
FT /ligand_id="ChEBI:CHEBI:60240"
FT /evidence="ECO:0000256|PIRSR:PIRSR036684-3"
FT BINDING 291
FT /ligand="a divalent metal cation"
FT /ligand_id="ChEBI:CHEBI:60240"
FT /evidence="ECO:0000256|PIRSR:PIRSR036684-3"
SQ SEQUENCE 759 AA; 82162 MW; 3DBDEE41BEC24B37 CRC64;
MEERRQDNAR QEALDYHEFP RPGKLEIRAT KPLANGRDLS RAYSPGVAEA CLEIKADPAN
ASRYTSRGNL VAVVSNGTAV LGLGNIGAAA SKPVMEGKAV LFKKFANIDC FDIEVNESDP
EKLADIVCAL EPTFGAINLE DIKAPDCFIV EKLCRERMNI PVFHDDQHGT AIVVGAAATN
ALHVAGKRFS DIKVVSTGGG AAGIACLNML LKLGVKQENV WLCDIHGLVY KDRVEDMTIQ
KAAFAQDTEA RTLAEVMDGA DLFLGLSGPG VLKPEMVAKM ARRPIIFALA NPTPEILPDD
ARAVAPDAII ATGRSDFPNQ VNNVLCFPFI FRGALDVGAT TINADMELAC IEGIAALARA
TTAAEAAAAY RGETLTFGAE YLIPKPFDPR LVGVVSSAVA RAAMQTGVAT RPIADLEAYK
RKLDSSVFRS ALIMRPVFEA AATATRRIAF AEGEDERVLR AANAMLEETT DVPILIGRPD
VIATRAERAG LPIRPERDFE IVNPENDPRY RDYWETYHQL MARRGVSPDI ARAIMRTNTT
AIAAVMVHRA EADSLICGTF GQYSWHLRYI REILASDGLD PLGALSMIIL EDGPLFIADT
QCNDDPTPRQ IMETVMGAAR HVRRFGLTPK IALCCHSQFG NLDTYTGRKM RDALALLDAR
KPDFMYDGEM HVDAALDPAL RERIFPGSRL EGIANVLVFP GTDAASGVRN ALKMRANGLE
VGPILMGMGN RAHIVTPSIT ARGLLNMSVI AGTPVAHYS
//
