ID A0A251NL50_PRUPE Unreviewed; 1346 AA.
AC A0A251NL50;
DT 22-NOV-2017, integrated into UniProtKB/TrEMBL.
DT 22-NOV-2017, sequence version 1.
DT 27-MAR-2024, entry version 28.
DE RecName: Full=Helicase ATP-binding domain-containing protein {ECO:0008006|Google:ProtNLM};
GN ORFNames=PRUPE_6G062900 {ECO:0000313|EMBL:ONI00018.1};
OS Prunus persica (Peach) (Amygdalus persica).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus.
OX NCBI_TaxID=3760 {ECO:0000313|EMBL:ONI00018.1, ECO:0000313|Proteomes:UP000006882};
RN [1] {ECO:0000313|EMBL:ONI00018.1, ECO:0000313|Proteomes:UP000006882}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nemared {ECO:0000313|Proteomes:UP000006882};
RX PubMed=23525075; DOI=10.1038/ng.2586;
RA Verde I., Abbott A.G., Scalabrin S., Jung S., Shu S., Marroni F.,
RA Zhebentyayeva T., Dettori M.T., Grimwood J., Cattonaro F., Zuccolo A.,
RA Rossini L., Jenkins J., Vendramin E., Meisel L.A., Decroocq V.,
RA Sosinski B., Prochnik S., Mitros T., Policriti A., Cipriani G., Dondini L.,
RA Ficklin S., Goodstein D.M., Xuan P., Del Fabbro C., Aramini V., Copetti D.,
RA Gonzalez S., Horner D.S., Falchi R., Lucas S., Mica E., Maldonado J.,
RA Lazzari B., Bielenberg D., Pirona R., Miculan M., Barakat A., Testolin R.,
RA Stella A., Tartarini S., Tonutti P., Arus P., Orellana A., Wells C.,
RA Main D., Vizzotto G., Silva H., Salamini F., Schmutz J., Morgante M.,
RA Rokhsar D.S.;
RT "The high-quality draft genome of peach (Prunus persica) identifies unique
RT patterns of genetic diversity, domestication and genome evolution.";
RL Nat. Genet. 45:487-494(2013).
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DR EMBL; CM007656; ONI00018.1; -; Genomic_DNA.
DR EnsemblPlants; ONI00018; ONI00018; PRUPE_6G062900.
DR Gramene; ONI00018; ONI00018; PRUPE_6G062900.
DR Proteomes; UP000006882; Chromosome g6.
DR GO; GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
DR GO; GO:0005524; F:ATP binding; IEA:UniProtKB-KW.
DR GO; GO:0016787; F:hydrolase activity; IEA:UniProtKB-KW.
DR GO; GO:0003723; F:RNA binding; IEA:InterPro.
DR GO; GO:0003724; F:RNA helicase activity; IEA:InterPro.
DR GO; GO:0006401; P:RNA catabolic process; IEA:InterPro.
DR CDD; cd18795; SF2_C_Ski2; 1.
DR Gene3D; 1.10.3380.30; -; 2.
DR Gene3D; 3.40.50.300; P-loop containing nucleotide triphosphate hydrolases; 2.
DR InterPro; IPR011545; DEAD/DEAH_box_helicase_dom.
DR InterPro; IPR014001; Helicase_ATP-bd.
DR InterPro; IPR001650; Helicase_C.
DR InterPro; IPR048392; MTR4-like_stalk.
DR InterPro; IPR025696; MTR4_beta-barrel.
DR InterPro; IPR027417; P-loop_NTPase.
DR InterPro; IPR016438; SKI2-like.
DR InterPro; IPR012961; Ski2/MTR4_C.
DR InterPro; IPR040801; Ski2_N.
DR PANTHER; PTHR12131; ATP-DEPENDENT RNA AND DNA HELICASE; 1.
DR PANTHER; PTHR12131:SF24; DEXH-BOX ATP-DEPENDENT RNA HELICASE DEXH11; 1.
DR Pfam; PF00270; DEAD; 1.
DR Pfam; PF08148; DSHCT; 1.
DR Pfam; PF00271; Helicase_C; 1.
DR Pfam; PF21408; MTR4-like_stalk; 1.
DR Pfam; PF13234; MTR4_beta-barrel; 1.
DR Pfam; PF17911; Ski2_N; 1.
DR PIRSF; PIRSF005198; Antiviral_helicase_SKI2; 1.
DR SMART; SM00487; DEXDc; 1.
DR SMART; SM01142; DSHCT; 1.
DR SMART; SM00490; HELICc; 1.
DR SUPFAM; SSF52540; P-loop containing nucleoside triphosphate hydrolases; 1.
DR PROSITE; PS51192; HELICASE_ATP_BIND_1; 1.
DR PROSITE; PS51194; HELICASE_CTER; 1.
PE 4: Predicted;
KW ATP-binding {ECO:0000256|ARBA:ARBA00022840};
KW Helicase {ECO:0000256|ARBA:ARBA00022806};
KW Hydrolase {ECO:0000256|ARBA:ARBA00022801};
KW Nucleotide-binding {ECO:0000256|ARBA:ARBA00022741};
KW Reference proteome {ECO:0000313|Proteomes:UP000006882};
KW RNA-binding {ECO:0000256|ARBA:ARBA00022884}.
FT DOMAIN 362..517
FT /note="Helicase ATP-binding"
FT /evidence="ECO:0000259|PROSITE:PS51192"
FT DOMAIN 639..837
FT /note="Helicase C-terminal"
FT /evidence="ECO:0000259|PROSITE:PS51194"
FT REGION 565..625
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 584..625
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 1346 AA; 150500 MW; E312DB0742F91863 CRC64;
MDPIVAANGL SFRVGFSGHS GHLRLEPLST DESSNPVNSL PDFILPPAFA RETPESIKEY
IEDTYLLPRL DPEVFSPEKV GRQWDFDWFD NANVPLEPSL PRTVVVPTWE LPFRSQNDGS
VGGQWEPKSV QVDVSELIVG AQESGSLPRV AGPAKDFVRG SINNRPFRPG GLDDSKSLER
VLPDGASNGE WVHELLIGGS AQAVPPSFKQ GLDLGDLKAY PCSWNVYKDQ SPLKSTSDEK
DLQSELSVQF DDLFKKAWEE DVVEFEGDGQ LSGSESVKSE DEANEVDVAR NSCEPELSVL
DEILSVEANS RFNETDEDGE KNPEAWAISG GTEWIAENFY DLIPDKALDY PFELDKFQKE
AIYYLEKGDS VFVAAHTSAG KTVVAEYAFA LASKHCTRAV YTAPIKTISN QKYRDFCGKF
DVGLLTGDVS LRPEASCLIM TTEILRSMLY RGADIIRDIE WVIFDEVHYV NDVERGVVWE
EVIIMLPRHI NIVLLSATVP NKVEFADWIG RTKQKKIRVT GTTKRPVPLE HCLFYSGELY
KICESESFIP QGFKAAKDAF KKKNMSAATG GSGSHAPAPA SHDGARTQKQ SSNWGKQKKQ
SGPQNSGNFS KAGGSNQNNG NGMNNWGLRR SDASLWLSLI NKLSKKSLLP VVIFCFSKNR
CDKSADSMYG IDLTSSSEKS EIRVFCDKAF SRLKGSDRTL PQVVRVQNLL HRGIGVHHAG
LLPIVKEVVE MLFCRGVIKV LFSTETFAMG VNAPARTVVF DTLRKFDGKE FRQLLPGEYT
QMAGRAGRRG LDKIGTVIVM CRDEILEESD LKHVIVGSAT RLESQFRLTY IMILHLLRVE
ELKVEDMLKR SFAEFHAQKK LPEQQQLLMR KLAQPTKTIE CIKGEPAIEE YYDMYSEAET
YYTEILEAVM QSSAAQKFLT AGRVVVMKSQ SAQDHLLGVI VKASSSSNKQ YIVLVLKPEL
QTPLASGNLQ DSKNTDFPQG YFMAPKSKRA IEEDYFPGVT SRKGSGVINI KLPHQGSAAG
VRFEVREVDN KDFLCICNCK IKIDQVRLLE DVSSHAYSKT VQQLLGTKSN GNKYPPALDP
MEDLKLRDVN QVETYYKWTN LLQKMAKNKC HGCTKLEEHI ILAREIKRHK EEVNALKYEM
SDEALQQMPD FQGRIDVLKE IGCIDADLVV QIKGRVACEM NSGEELICTE CLFENQLDDL
EPEEAVALMS AFVFQQKNTS EPSLTPKLSQ AKQRLYNTAI RLGELQGHFK VQINPEEYAR
ENLKFGLVQV VYEWAKGTPF ADICELTDVP EGMIVRTIVR LDETCREFKN AASIMGNSAL
YKKMETASNA IKRDIVFAAS LYVTGV
//