ID A0A263BUD3_9BACI Unreviewed; 394 AA.
AC A0A263BUD3;
DT 20-DEC-2017, integrated into UniProtKB/TrEMBL.
DT 20-DEC-2017, sequence version 1.
DT 27-MAR-2024, entry version 16.
DE RecName: Full=serine-type D-Ala-D-Ala carboxypeptidase {ECO:0000256|ARBA:ARBA00012448};
DE EC=3.4.16.4 {ECO:0000256|ARBA:ARBA00012448};
GN ORFNames=CIB95_06695 {ECO:0000313|EMBL:OZM57152.1};
OS Lottiidibacillus patelloidae.
OC Bacteria; Bacillota; Bacilli; Bacillales; Bacillaceae; Lottiidibacillus.
OX NCBI_TaxID=2670334 {ECO:0000313|EMBL:OZM57152.1, ECO:0000313|Proteomes:UP000217083};
RN [1] {ECO:0000313|Proteomes:UP000217083}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=SA5d-4 {ECO:0000313|Proteomes:UP000217083};
RA Huang Z.;
RL Submitted (AUG-2017) to the EMBL/GenBank/DDBJ databases.
RN [2] {ECO:0000313|EMBL:OZM57152.1, ECO:0000313|Proteomes:UP000217083}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=SA5d-4 {ECO:0000313|EMBL:OZM57152.1,
RC ECO:0000313|Proteomes:UP000217083};
RA Liu R., Dong C., Shao Z.;
RT "Bacillus patelloidae sp. nov., isolated from the intestinal tract of a
RT marine limpet.";
RL Submitted (SEP-2017) to the EMBL/GenBank/DDBJ databases.
CC -!- CATALYTIC ACTIVITY:
CC Reaction=Preferential cleavage: (Ac)2-L-Lys-D-Ala-|-D-Ala. Also
CC transpeptidation of peptidyl-alanyl moieties that are N-acyl
CC substituents of D-alanine.; EC=3.4.16.4;
CC Evidence={ECO:0000256|ARBA:ARBA00034000};
CC -!- PATHWAY: Cell wall biogenesis; peptidoglycan biosynthesis.
CC {ECO:0000256|ARBA:ARBA00004752}.
CC -!- SIMILARITY: Belongs to the peptidase S11 family.
CC {ECO:0000256|ARBA:ARBA00007164, ECO:0000256|RuleBase:RU004016}.
CC -!- CAUTION: The sequence shown here is derived from an EMBL/GenBank/DDBJ
CC whole genome shotgun (WGS) entry which is preliminary data.
CC {ECO:0000313|EMBL:OZM57152.1}.
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DR EMBL; NPIA01000003; OZM57152.1; -; Genomic_DNA.
DR AlphaFoldDB; A0A263BUD3; -.
DR Proteomes; UP000217083; Unassembled WGS sequence.
DR GO; GO:0009002; F:serine-type D-Ala-D-Ala carboxypeptidase activity; IEA:InterPro.
DR GO; GO:0071555; P:cell wall organization; IEA:UniProtKB-KW.
DR GO; GO:0009252; P:peptidoglycan biosynthetic process; IEA:UniProtKB-KW.
DR GO; GO:0006508; P:proteolysis; IEA:UniProtKB-KW.
DR GO; GO:0008360; P:regulation of cell shape; IEA:UniProtKB-KW.
DR Gene3D; 2.30.140.30; -; 1.
DR Gene3D; 3.40.710.10; DD-peptidase/beta-lactamase superfamily; 1.
DR InterPro; IPR012338; Beta-lactam/transpept-like.
DR InterPro; IPR018044; Peptidase_S11.
DR InterPro; IPR012907; Peptidase_S11_C.
DR InterPro; IPR001967; Peptidase_S11_N.
DR PANTHER; PTHR21581; D-ALANYL-D-ALANINE CARBOXYPEPTIDASE; 1.
DR PANTHER; PTHR21581:SF32; D-ALANYL-D-ALANINE CARBOXYPEPTIDASE DACB; 1.
DR Pfam; PF07943; PBP5_C; 1.
DR Pfam; PF00768; Peptidase_S11; 1.
DR PRINTS; PR00725; DADACBPTASE1.
DR SUPFAM; SSF56601; beta-lactamase/transpeptidase-like; 1.
PE 3: Inferred from homology;
KW Carboxypeptidase {ECO:0000313|EMBL:OZM57152.1};
KW Cell shape {ECO:0000256|ARBA:ARBA00022960};
KW Cell wall biogenesis/degradation {ECO:0000256|ARBA:ARBA00023316};
KW Hydrolase {ECO:0000256|ARBA:ARBA00022801};
KW Peptidoglycan synthesis {ECO:0000256|ARBA:ARBA00022984};
KW Protease {ECO:0000256|ARBA:ARBA00022670};
KW Reference proteome {ECO:0000313|Proteomes:UP000217083};
KW Signal {ECO:0000256|ARBA:ARBA00022729, ECO:0000256|SAM:SignalP}.
FT SIGNAL 1..28
FT /evidence="ECO:0000256|SAM:SignalP"
FT CHAIN 29..394
FT /note="serine-type D-Ala-D-Ala carboxypeptidase"
FT /evidence="ECO:0000256|SAM:SignalP"
FT /id="PRO_5013215443"
FT DOMAIN 28..254
FT /note="Peptidase S11 D-alanyl-D-alanine carboxypeptidase A
FT N-terminal"
FT /evidence="ECO:0000259|Pfam:PF00768"
FT DOMAIN 272..353
FT /note="Peptidase S11 D-Ala-D-Ala carboxypeptidase A C-
FT terminal"
FT /evidence="ECO:0000259|Pfam:PF07943"
FT ACT_SITE 62
FT /note="Acyl-ester intermediate"
FT /evidence="ECO:0000256|PIRSR:PIRSR618044-1"
FT ACT_SITE 65
FT /note="Proton acceptor"
FT /evidence="ECO:0000256|PIRSR:PIRSR618044-1"
FT ACT_SITE 117
FT /evidence="ECO:0000256|PIRSR:PIRSR618044-1"
FT BINDING 225
FT /ligand="substrate"
FT /evidence="ECO:0000256|PIRSR:PIRSR618044-2"
SQ SEQUENCE 394 AA; 44597 MW; 1E48BFB9A488B434 CRC64;
MKRNYKKYFS FLAIFTLLVA LFPINSYAER PSTFAQTAIL MEQDTGRVLY DKKMHQKMRI
ASITKIMTAL LAVESGKLDE MVTVSKNAAY TEGSSIYLKP GDKMKLEDLT YGLMLRSGND
AAVAIAEHVG GSLEGFVYLM NQKAEEIGMS NTYFSNPHGL DDHEKHFSTA YDMALLTQYA
MQNETYKKIS GTKKHRASRE GGPDNIWGNK NRLLTSLYEY CTGGKTGYTK RARRTLVTTA
EKDDMRLIAV TLNDGNDWND HRNLYEWGFN TFEMVTLAEA GLIKGLKDPY YKNHVEVKHP
FIYPLTEAEK VNVDIKIKLI KPDIKKWKRS GPPEIVGKMN FYLSGEKIGD RSIFYEAIQS
TSSISISVGK DEKSAFFHLF IHVLTRALGV TENG
//
