ID A0A269PL97_9GAMM Unreviewed; 382 AA.
AC A0A269PL97;
DT 20-DEC-2017, integrated into UniProtKB/TrEMBL.
DT 20-DEC-2017, sequence version 1.
DT 27-MAR-2024, entry version 16.
DE RecName: Full=succinyl-diaminopimelate desuccinylase {ECO:0000256|ARBA:ARBA00011921};
DE EC=3.5.1.18 {ECO:0000256|ARBA:ARBA00011921};
GN ORFNames=CJF42_18560 {ECO:0000313|EMBL:PAJ72949.1};
OS Pseudoalteromonas sp. NBT06-2.
OC Bacteria; Pseudomonadota; Gammaproteobacteria; Alteromonadales;
OC Pseudoalteromonadaceae; Pseudoalteromonas.
OX NCBI_TaxID=2025950 {ECO:0000313|EMBL:PAJ72949.1, ECO:0000313|Proteomes:UP000215836};
RN [1] {ECO:0000313|EMBL:PAJ72949.1, ECO:0000313|Proteomes:UP000215836}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=NBT06-2 {ECO:0000313|EMBL:PAJ72949.1,
RC ECO:0000313|Proteomes:UP000215836};
RA Wei Y.;
RT "Pseudoalteromonas hadalis sp. nov., a facultative psychrophile isolated
RT from New Britain Trench.";
RL Submitted (AUG-2017) to the EMBL/GenBank/DDBJ databases.
CC -!- CATALYTIC ACTIVITY:
CC Reaction=H2O + N-succinyl-(2S,6S)-2,6-diaminoheptanedioate =
CC (2S,6S)-2,6-diaminoheptanedioate + succinate; Xref=Rhea:RHEA:22608,
CC ChEBI:CHEBI:15377, ChEBI:CHEBI:30031, ChEBI:CHEBI:57609,
CC ChEBI:CHEBI:58087; EC=3.5.1.18;
CC Evidence={ECO:0000256|ARBA:ARBA00001246};
CC -!- COFACTOR:
CC Name=Co(2+); Xref=ChEBI:CHEBI:48828;
CC Evidence={ECO:0000256|ARBA:ARBA00001941};
CC -!- COFACTOR:
CC Name=Zn(2+); Xref=ChEBI:CHEBI:29105;
CC Evidence={ECO:0000256|ARBA:ARBA00001947};
CC -!- PATHWAY: Amino-acid biosynthesis; L-lysine biosynthesis via DAP
CC pathway; LL-2,6-diaminopimelate from (S)-tetrahydrodipicolinate
CC (succinylase route): step 3/3. {ECO:0000256|ARBA:ARBA00005130}.
CC -!- CAUTION: The sequence shown here is derived from an EMBL/GenBank/DDBJ
CC whole genome shotgun (WGS) entry which is preliminary data.
CC {ECO:0000313|EMBL:PAJ72949.1}.
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DR EMBL; NQMR01000112; PAJ72949.1; -; Genomic_DNA.
DR AlphaFoldDB; A0A269PL97; -.
DR OrthoDB; 9776600at2; -.
DR Proteomes; UP000215836; Unassembled WGS sequence.
DR GO; GO:0016787; F:hydrolase activity; IEA:UniProtKB-KW.
DR GO; GO:0046872; F:metal ion binding; IEA:UniProtKB-KW.
DR GO; GO:1901564; P:organonitrogen compound metabolic process; IEA:UniProt.
DR CDD; cd03885; M20_CPDG2; 1.
DR Gene3D; 3.30.70.360; -; 1.
DR Gene3D; 3.40.630.10; Zn peptidases; 1.
DR InterPro; IPR001261; ArgE/DapE_CS.
DR InterPro; IPR036264; Bact_exopeptidase_dim_dom.
DR InterPro; IPR017150; Pept_M20_glutamate_carboxypep.
DR InterPro; IPR002933; Peptidase_M20.
DR InterPro; IPR011650; Peptidase_M20_dimer.
DR PANTHER; PTHR43808; ACETYLORNITHINE DEACETYLASE; 1.
DR PANTHER; PTHR43808:SF8; M20_DIMER DOMAIN-CONTAINING PROTEIN; 1.
DR Pfam; PF07687; M20_dimer; 1.
DR Pfam; PF01546; Peptidase_M20; 1.
DR PIRSF; PIRSF037238; Carboxypeptidase_G2; 1.
DR SUPFAM; SSF55031; Bacterial exopeptidase dimerisation domain; 1.
DR SUPFAM; SSF53187; Zn-dependent exopeptidases; 1.
DR PROSITE; PS00758; ARGE_DAPE_CPG2_1; 1.
PE 4: Predicted;
KW Hydrolase {ECO:0000256|ARBA:ARBA00022801};
KW Metal-binding {ECO:0000256|ARBA:ARBA00022723};
KW Reference proteome {ECO:0000313|Proteomes:UP000215836};
KW Zinc {ECO:0000256|ARBA:ARBA00022833}.
FT DOMAIN 169..269
FT /note="Peptidase M20 dimerisation"
FT /evidence="ECO:0000259|Pfam:PF07687"
FT ACT_SITE 75
FT /evidence="ECO:0000256|PIRSR:PIRSR037238-1"
FT ACT_SITE 133
FT /note="Proton acceptor"
FT /evidence="ECO:0000256|PIRSR:PIRSR037238-1"
SQ SEQUENCE 382 AA; 42046 MW; 432F310B4CE1728F CRC64;
MIKSMNFTEL AKIININSYS KNKCGVDQNA EVFKSWMLPL GFQSQTYERA LIGNHILFKS
NKKPGKKILL LGHLDTVYPP GTFEKFSEDD DWIYGPGVCD MKGGNYVALC ALRNLKQQTG
EIVNIDMLLV SDEETGSDDS KTLSSQLAKN YDYCFVFEAA GKNHEVVLSR KGVATFNIKI
EGKAAHAGNE YSNGINANLA AAHMIIDLTA LTDLTQETTV NVGKCSGGVG ANTISPKANL
VVEARFNCFD EKLRVLENIY HIVDHAKVEG VKISITGGVQ RDVMSPTLKQ EELLNFINSA
IGYTLPTESR GGVSDANTMS EAGLITIDGF GPFGDGDHTT NERACKNSFI RRIDEMSKIL
FQYTKQNSNK YVETSMKKAR FA
//
