GenomeNet

Database: UniProt
Entry: A0A285IXV5_9GAMM
LinkDB: A0A285IXV5_9GAMM
Original site: A0A285IXV5_9GAMM 
ID   A0A285IXV5_9GAMM        Unreviewed;       791 AA.
AC   A0A285IXV5;
DT   22-NOV-2017, integrated into UniProtKB/TrEMBL.
DT   22-NOV-2017, sequence version 1.
DT   24-JAN-2024, entry version 22.
DE   RecName: Full=Ribonuclease R {ECO:0000256|HAMAP-Rule:MF_01895};
DE            Short=RNase R {ECO:0000256|HAMAP-Rule:MF_01895};
DE            EC=3.1.13.1 {ECO:0000256|HAMAP-Rule:MF_01895};
GN   Name=rnr {ECO:0000256|HAMAP-Rule:MF_01895};
GN   ORFNames=SAMN06297280_2222 {ECO:0000313|EMBL:SNY52802.1};
OS   Arsukibacterium tuosuense.
OC   Bacteria; Pseudomonadota; Gammaproteobacteria; Chromatiales; Chromatiaceae;
OC   Arsukibacterium.
OX   NCBI_TaxID=1323745 {ECO:0000313|EMBL:SNY52802.1, ECO:0000313|Proteomes:UP000219353};
RN   [1] {ECO:0000313|EMBL:SNY52802.1, ECO:0000313|Proteomes:UP000219353}
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=CGMCC 1.12461 {ECO:0000313|EMBL:SNY52802.1,
RC   ECO:0000313|Proteomes:UP000219353};
RA   Ehlers B., Leendertz F.H.;
RL   Submitted (SEP-2017) to the EMBL/GenBank/DDBJ databases.
CC   -!- FUNCTION: 3'-5' exoribonuclease that releases 5'-nucleoside
CC       monophosphates and is involved in maturation of structured RNAs.
CC       {ECO:0000256|HAMAP-Rule:MF_01895}.
CC   -!- CATALYTIC ACTIVITY:
CC       Reaction=Exonucleolytic cleavage in the 3'- to 5'-direction to yield
CC         nucleoside 5'-phosphates.; EC=3.1.13.1;
CC         Evidence={ECO:0000256|ARBA:ARBA00001849, ECO:0000256|HAMAP-
CC         Rule:MF_01895};
CC   -!- SUBCELLULAR LOCATION: Cytoplasm {ECO:0000256|HAMAP-Rule:MF_01895}.
CC   -!- SIMILARITY: Belongs to the RNR ribonuclease family. RNase R subfamily.
CC       {ECO:0000256|HAMAP-Rule:MF_01895}.
CC   ---------------------------------------------------------------------------
CC   Copyrighted by the UniProt Consortium, see https://www.uniprot.org/terms
CC   Distributed under the Creative Commons Attribution (CC BY 4.0) License
CC   ---------------------------------------------------------------------------
DR   EMBL; OBEB01000004; SNY52802.1; -; Genomic_DNA.
DR   AlphaFoldDB; A0A285IXV5; -.
DR   OrthoDB; 9764149at2; -.
DR   Proteomes; UP000219353; Unassembled WGS sequence.
DR   GO; GO:0005829; C:cytosol; IEA:UniProt.
DR   GO; GO:0008859; F:exoribonuclease II activity; IEA:UniProtKB-UniRule.
DR   GO; GO:0003723; F:RNA binding; IEA:UniProtKB-UniRule.
DR   GO; GO:0016070; P:RNA metabolic process; IEA:UniProtKB-UniRule.
DR   CDD; cd04471; S1_RNase_R; 1.
DR   Gene3D; 2.40.50.140; Nucleic acid-binding proteins; 2.
DR   HAMAP; MF_01895; RNase_R; 1.
DR   InterPro; IPR011129; CSD.
DR   InterPro; IPR040476; CSD2.
DR   InterPro; IPR012340; NA-bd_OB-fold.
DR   InterPro; IPR013223; RNase_B_OB_dom.
DR   InterPro; IPR001900; RNase_II/R.
DR   InterPro; IPR022966; RNase_II/R_CS.
DR   InterPro; IPR004476; RNase_II/RNase_R.
DR   InterPro; IPR011805; RNase_R.
DR   InterPro; IPR013668; RNase_R_HTH_12.
DR   InterPro; IPR003029; S1_domain.
DR   NCBIfam; TIGR00358; 3_prime_RNase; 1.
DR   NCBIfam; TIGR02063; RNase_R; 1.
DR   PANTHER; PTHR23355:SF9; DIS3-LIKE EXONUCLEASE 2; 1.
DR   PANTHER; PTHR23355; RIBONUCLEASE; 1.
DR   Pfam; PF17876; CSD2; 1.
DR   Pfam; PF08461; HTH_12; 1.
DR   Pfam; PF08206; OB_RNB; 1.
DR   Pfam; PF00773; RNB; 1.
DR   Pfam; PF00575; S1; 1.
DR   SMART; SM00357; CSP; 1.
DR   SMART; SM00955; RNB; 1.
DR   SMART; SM00316; S1; 1.
DR   SUPFAM; SSF50249; Nucleic acid-binding proteins; 4.
DR   PROSITE; PS01175; RIBONUCLEASE_II; 1.
DR   PROSITE; PS50126; S1; 1.
PE   3: Inferred from homology;
KW   Cytoplasm {ECO:0000256|HAMAP-Rule:MF_01895};
KW   Exonuclease {ECO:0000256|ARBA:ARBA00022839, ECO:0000256|HAMAP-
KW   Rule:MF_01895};
KW   Hydrolase {ECO:0000256|ARBA:ARBA00022801, ECO:0000256|HAMAP-Rule:MF_01895};
KW   Nuclease {ECO:0000256|ARBA:ARBA00022722, ECO:0000256|HAMAP-Rule:MF_01895};
KW   RNA-binding {ECO:0000256|HAMAP-Rule:MF_01895}.
FT   DOMAIN          640..721
FT                   /note="S1 motif"
FT                   /evidence="ECO:0000259|PROSITE:PS50126"
FT   REGION          744..791
FT                   /note="Disordered"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ   SEQUENCE   791 AA;  88945 MW;  CCC25C6A27092FE4 CRC64;
     MTVNDPHLAR EQEKYDNPIP SREFILEHIE KRQQPAYFEE LVTELALTDD DAIFALKKRL
     RAMERDGQLI FTKSKRYGLV DHMDLVKGVV MGHREGFGFL KLEQGGPDWY LPYHEMQRVL
     PGDKVLATAA AMKSKDKVEA RVVRVLEPRT EPVVGRYYKD SAVCVVVPDD PRITQDIMIP
     EGEQGAARHG QIVLVEITQR PSKRVSAVGK VIEVLGEHMA PGMEIEVAIR NHQIPHEFPE
     SVLQQVAKYG EQVPEEAKLG RVDLTKLPLV TIDGEDARDF DDAVYAEAKE NGGWKLWVAI
     ADVSAYVKPD TPLDRSALER GNSVYFPDHV VPMLPEALSN GLCSLNPHTD RLCFVAEMHI
     SASGKLESYQ FYEAVMHSAA RFTYNKVHAI LQGDPELRKQ YQANLTNLET LYSLYKKLAK
     VRGQRGAIEF ETVETRFIFN SHRKIEQIVP VHRNEAHKII EECMIMANVA SARFVEKHEA
     HALFRVHERP DGDRFANFRR FLAELGIEAN LSSEPTPLEL TQVLANLADR PDRELIETTM
     LRSMKQAVYQ GDNQGHFGLA LEAYAHFTSP IRRYPDLVLH RAIKAILVKQ NQKVNGERAY
     SEKEITHFGE QCSMTERRAD DATREVSDWL KCEYMQDHLG AEFDGVVATV TNFGLFVRLS
     DLYIEGLVHV TSLQNDYYRF DAERQVLNGE HSGVSYRMGD QVKVKVLAVS LESRKIDLAV
     VGEPKHNVSG RAVKASRNAA FAEKEAKAAG AGRRSGKGGG KVAAKPAAKA ADKPKTAKGG
     SKKPRRRAKK S
//
DBGET integrated database retrieval system