ID A0A288DKH7_9BACT Unreviewed; 500 AA.
AC A0A288DKH7;
DT 20-DEC-2017, integrated into UniProtKB/TrEMBL.
DT 20-DEC-2017, sequence version 1.
DT 13-SEP-2023, entry version 17.
DE RecName: Full=Ribonuclease Y {ECO:0000256|HAMAP-Rule:MF_00335};
DE Short=RNase Y {ECO:0000256|HAMAP-Rule:MF_00335};
DE EC=3.1.-.- {ECO:0000256|HAMAP-Rule:MF_00335};
GN Name=rny {ECO:0000256|HAMAP-Rule:MF_00335};
GN ORFNames=P148_SR1C00001G0069 {ECO:0000313|EMBL:AHB40884.1};
OS candidate division SR1 bacterium RAAC1_SR1_1.
OC Bacteria; Candidatus Absconditabacteria.
OX NCBI_TaxID=1394709 {ECO:0000313|EMBL:AHB40884.1, ECO:0000313|Proteomes:UP000217256};
RN [1] {ECO:0000313|EMBL:AHB40884.1, ECO:0000313|Proteomes:UP000217256}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=RAAC1_SR1_1 {ECO:0000313|EMBL:AHB40884.1,
RC ECO:0000313|Proteomes:UP000217256};
RA Kantor R.S., Wrighton K.C., Handley K.M., Sharon I., Hug L.A.,
RA Castelle C.J., Thomas B.C., Banfield J.F.;
RT "Small genomes and sparse metabolisms of sediment-associated bacteria from
RT four candidate phyla.";
RL Submitted (NOV-2013) to the EMBL/GenBank/DDBJ databases.
CC -!- FUNCTION: Endoribonuclease that initiates mRNA decay.
CC {ECO:0000256|HAMAP-Rule:MF_00335}.
CC -!- SIMILARITY: Belongs to the RNase Y family. {ECO:0000256|HAMAP-
CC Rule:MF_00335}.
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DR EMBL; CP006913; AHB40884.1; -; Genomic_DNA.
DR AlphaFoldDB; A0A288DKH7; -.
DR STRING; 1394709.P148_SR1C00001G0069; -.
DR KEGG; srb:P148_SR1C001G0069; -.
DR HOGENOM; CLU_028328_1_0_0; -.
DR Proteomes; UP000217256; Chromosome.
DR GO; GO:0005886; C:plasma membrane; IEA:UniProtKB-UniRule.
DR GO; GO:0003723; F:RNA binding; IEA:UniProtKB-UniRule.
DR GO; GO:0004521; F:RNA endonuclease activity; IEA:UniProtKB-UniRule.
DR GO; GO:0006402; P:mRNA catabolic process; IEA:UniProtKB-UniRule.
DR CDD; cd00077; HDc; 1.
DR CDD; cd22431; KH-I_RNaseY; 1.
DR Gene3D; 1.10.3210.10; Hypothetical protein af1432; 1.
DR HAMAP; MF_00335; RNase_Y; 1.
DR InterPro; IPR003607; HD/PDEase_dom.
DR InterPro; IPR006674; HD_domain.
DR InterPro; IPR006675; HDIG_dom.
DR InterPro; IPR004087; KH_dom.
DR InterPro; IPR036612; KH_dom_type_1_sf.
DR InterPro; IPR017705; Ribonuclease_Y.
DR InterPro; IPR022711; RNase_Y_N.
DR NCBIfam; TIGR00277; HDIG; 1.
DR NCBIfam; TIGR03319; RNase_Y; 1.
DR PANTHER; PTHR12826; RIBONUCLEASE Y; 1.
DR PANTHER; PTHR12826:SF15; RIBONUCLEASE Y; 1.
DR Pfam; PF01966; HD; 1.
DR Pfam; PF12072; RNase_Y_N; 1.
DR SMART; SM00471; HDc; 1.
DR SMART; SM00322; KH; 1.
DR SUPFAM; SSF54791; Eukaryotic type KH-domain (KH-domain type I); 1.
DR SUPFAM; SSF109604; HD-domain/PDEase-like; 1.
DR PROSITE; PS51831; HD; 1.
PE 3: Inferred from homology;
KW Coiled coil {ECO:0000256|SAM:Coils};
KW Endonuclease {ECO:0000256|ARBA:ARBA00022759, ECO:0000256|HAMAP-
KW Rule:MF_00335};
KW Hydrolase {ECO:0000256|ARBA:ARBA00022801, ECO:0000256|HAMAP-Rule:MF_00335};
KW Nuclease {ECO:0000256|ARBA:ARBA00022722, ECO:0000256|HAMAP-Rule:MF_00335};
KW Reference proteome {ECO:0000313|Proteomes:UP000217256};
KW RNA-binding {ECO:0000256|ARBA:ARBA00022884, ECO:0000256|HAMAP-
KW Rule:MF_00335}.
FT DOMAIN 317..409
FT /note="HD"
FT /evidence="ECO:0000259|PROSITE:PS51831"
FT COILED 25..146
FT /evidence="ECO:0000256|SAM:Coils"
SQ SEQUENCE 500 AA; 57173 MW; DE42C1BD71A855E0 CRC64;
MNIFVILGYL LALGFGGAAG FYGYKRTLTQ KAIQFKERMN KAKELEEEMV EEAKKKVEKL
MEQAEEKAQR IEDQRLQKME VIQNRLLARE EKMDEKLEKL EQEKGKLNDK QKDLEEKINE
QVNKLAEMAK LSKEEAKKQL MDQIEKEYQN DFTTFIEKLK NIKKEEADKE AAMIISKALP
RVAVDSVSEF TTKTVDLPNE DFKGKLIGRE GRNISYFEKM TGVELIVDDT PLVVRLSSFD
SEKRYIAATT LERLVKDGKI NPFYIEKTYN QVVSDLDMLY TEKGKEALTV LNIPMMKPEI
VKMIGQYYLR FSYGQNLWQH SVEVAKICEA IASEFGLDTL LAKKAGLLHD IGKIIANTGE
SHAKIGADVL RKFGMDPIIV NAAEAHHYDV PIDNPYAWIV TAADAMSASR PGARFNTKEL
FIEKMGELEK LINEIPGIDK VHIMQAGREI MVYVNPKEIS DLELEKLLKT IGEKIDSQLD
YPGIIRITGI RETKIIEFLR
//
