ID A0A290QBB3_9LACT Unreviewed; 447 AA.
AC A0A290QBB3;
DT 20-DEC-2017, integrated into UniProtKB/TrEMBL.
DT 20-DEC-2017, sequence version 1.
DT 24-JAN-2024, entry version 37.
DE SubName: Full=RNA polymerase factor sigma-54 {ECO:0000313|EMBL:QIW57009.1};
GN Name=rpoN {ECO:0000313|EMBL:QIW57009.1};
GN ORFNames=GU335_10750 {ECO:0000313|EMBL:QIW57009.1};
OS Lactococcus raffinolactis.
OC Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae;
OC Lactococcus.
OX NCBI_TaxID=1366 {ECO:0000313|EMBL:QIW57009.1, ECO:0000313|Proteomes:UP000501197};
RN [1] {ECO:0000313|EMBL:QIW57009.1, ECO:0000313|Proteomes:UP000501197}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=Lr_19_4S {ECO:0000313|EMBL:QIW57009.1,
RC ECO:0000313|Proteomes:UP000501197};
RA Ybazeta G., Ross M., Brabant-Kirwan D., Saleh M., Dillon J.A., Splinter K.,
RA Nokhbeh R.;
RT "Whole genome sequences of Lactococcus raffinolactis strains isolated from
RT sewage.";
RL Submitted (MAR-2020) to the EMBL/GenBank/DDBJ databases.
CC -!- SIMILARITY: Belongs to the sigma-54 factor family.
CC {ECO:0000256|ARBA:ARBA00008798}.
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DR EMBL; CP050534; QIW57009.1; -; Genomic_DNA.
DR STRING; 1348633.GCA_001591765_01408; -.
DR Proteomes; UP000501197; Chromosome.
DR GO; GO:0000428; C:DNA-directed RNA polymerase complex; IEA:UniProtKB-KW.
DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW.
DR GO; GO:0001216; F:DNA-binding transcription activator activity; IEA:InterPro.
DR GO; GO:0016779; F:nucleotidyltransferase activity; IEA:UniProtKB-KW.
DR GO; GO:0016987; F:sigma factor activity; IEA:UniProtKB-KW.
DR GO; GO:0006352; P:DNA-templated transcription initiation; IEA:InterPro.
DR Gene3D; 1.10.10.60; Homeodomain-like; 1.
DR Gene3D; 1.10.10.1330; RNA polymerase sigma-54 factor, core-binding domain; 1.
DR InterPro; IPR000394; RNA_pol_sigma_54.
DR InterPro; IPR007046; RNA_pol_sigma_54_core-bd.
DR InterPro; IPR007634; RNA_pol_sigma_54_DNA-bd.
DR InterPro; IPR038709; RpoN_core-bd_sf.
DR NCBIfam; TIGR02395; rpoN_sigma; 1.
DR PANTHER; PTHR32248; RNA POLYMERASE SIGMA-54 FACTOR; 1.
DR PANTHER; PTHR32248:SF4; RNA POLYMERASE SIGMA-54 FACTOR; 1.
DR Pfam; PF00309; Sigma54_AID; 1.
DR Pfam; PF04963; Sigma54_CBD; 1.
DR Pfam; PF04552; Sigma54_DBD; 1.
DR PIRSF; PIRSF000774; RpoN; 1.
DR PRINTS; PR00045; SIGMA54FCT.
DR PROSITE; PS00717; SIGMA54_1; 1.
DR PROSITE; PS50044; SIGMA54_3; 1.
PE 3: Inferred from homology;
KW DNA-binding {ECO:0000256|ARBA:ARBA00023125};
KW DNA-directed RNA polymerase {ECO:0000256|ARBA:ARBA00022478};
KW Nucleotidyltransferase {ECO:0000256|ARBA:ARBA00022695};
KW Sigma factor {ECO:0000256|ARBA:ARBA00023082};
KW Transcription {ECO:0000256|ARBA:ARBA00023163};
KW Transcription regulation {ECO:0000256|ARBA:ARBA00023015};
KW Transferase {ECO:0000256|ARBA:ARBA00022679}.
SQ SEQUENCE 447 AA; 51109 MW; DDD37A18FA03025A CRC64;
MSQKPSINLK QSQTQQQKLA MTQTMQQAIQ ILHFSTNDLR DYLREQSLDN PLISVSNSSD
SFEPPQINRG LNQASEDRHQ AFLEQLPAEK VSLYEHVLAQ IHLNYRDTFL RTLLLFLVEY
IDANGYLTLS LDAAATKTGA TEIQLLDALT LLQQLEPAGI GARNLQECLM LQTERDHAAP
DIAYLLLEES FNDLVNRQWE GISQKYAVSF PEIQAVFDYI PTLTPRPGAA YAQTLAQYIK
PDLEVTVSGQ HLDIQSTKAG QPQITFQDKY YNRYKEIEDV ELQAYLKDRK AEFDWLKTTV
ENRGETILRV GQEILRHQSD FFLDDRHPLK PLTLKEVAQS LDLHESTISR AVNQKYMRTP
WGIYELKHFF PQGILQKNGE ATGEVVANTA IKSELQNIVA NENKQAPLSD QKIVDQLKQA
GFDISRRTVV KYRDALGIPT SRNRKRY
//
