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Database: UniProt
Entry: A0A291JJB9_9STAP
LinkDB: A0A291JJB9_9STAP
Original site: A0A291JJB9_9STAP 
ID   A0A291JJB9_9STAP        Unreviewed;       200 AA.
AC   A0A291JJB9;
DT   20-DEC-2017, integrated into UniProtKB/TrEMBL.
DT   20-DEC-2017, sequence version 1.
DT   24-JAN-2024, entry version 29.
DE   RecName: Full=Small ribosomal subunit protein uS4 {ECO:0000256|ARBA:ARBA00035254, ECO:0000256|HAMAP-Rule:MF_01306};
GN   Name=rpsD {ECO:0000256|HAMAP-Rule:MF_01306,
GN   ECO:0000313|EMBL:SUM54855.1};
GN   ORFNames=BJD96_05780 {ECO:0000313|EMBL:ATH59839.1}, BUZ60_02130
GN   {ECO:0000313|EMBL:RIO44531.1}, BUZ61_07155
GN   {ECO:0000313|EMBL:PTK59019.1}, NCTC13834_01202
GN   {ECO:0000313|EMBL:SUM54855.1};
OS   Staphylococcus nepalensis.
OC   Bacteria; Bacillota; Bacilli; Bacillales; Staphylococcaceae;
OC   Staphylococcus.
OX   NCBI_TaxID=214473 {ECO:0000313|EMBL:ATH59839.1, ECO:0000313|Proteomes:UP000217956};
RN   [1] {ECO:0000313|Proteomes:UP000240400, ECO:0000313|Proteomes:UP000265695}
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=SNUC 4025 {ECO:0000313|EMBL:RIO44531.1,
RC   ECO:0000313|Proteomes:UP000265695}, and SNUC 4337
RC   {ECO:0000313|EMBL:PTK59019.1, ECO:0000313|Proteomes:UP000240400};
RX   PubMed=28066335; DOI=.3389/fmicb.2016.01990;
RA   Naushad S., Barkema H.W., Luby C., Condas L.A., Nobrega D.B., Carson D.A.,
RA   De Buck J.;
RT   "Comprehensive Phylogenetic Analysis of Bovine Non-aureus Staphylococci
RT   Species Based on Whole-Genome Sequencing.";
RL   Front. Microbiol. 7:1990-1990(2016).
RN   [2] {ECO:0000313|EMBL:ATH59839.1, ECO:0000313|Proteomes:UP000217956}
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=JS1 {ECO:0000313|EMBL:ATH59839.1,
RC   ECO:0000313|Proteomes:UP000217956};
RA   Nam Y.-D., Kang J., Chung W.-H.;
RT   "Complete genome sequence of Staphylococcus nepalensis JS1.";
RL   Submitted (SEP-2016) to the EMBL/GenBank/DDBJ databases.
RN   [3] {ECO:0000313|EMBL:PTK59019.1}
RP   NUCLEOTIDE SEQUENCE.
RC   STRAIN=SNUC 4337 {ECO:0000313|EMBL:PTK59019.1};
RA   Keele B.F.;
RL   Submitted (MAR-2018) to the EMBL/GenBank/DDBJ databases.
RN   [4] {ECO:0000313|EMBL:SUM54855.1, ECO:0000313|Proteomes:UP000254412}
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=NCTC13834 {ECO:0000313|EMBL:SUM54855.1,
RC   ECO:0000313|Proteomes:UP000254412};
RG   Pathogen Informatics;
RA   Doyle S.;
RL   Submitted (JUN-2018) to the EMBL/GenBank/DDBJ databases.
RN   [5] {ECO:0000313|EMBL:RIO44531.1}
RP   NUCLEOTIDE SEQUENCE.
RC   STRAIN=SNUC 4025 {ECO:0000313|EMBL:RIO44531.1};
RA   Parvin R., Begum J.A., Chowdhury E.H., Islam M.R., Harder T.;
RL   Submitted (SEP-2018) to the EMBL/GenBank/DDBJ databases.
CC   -!- FUNCTION: One of the primary rRNA binding proteins, it binds directly
CC       to 16S rRNA where it nucleates assembly of the body of the 30S subunit.
CC       {ECO:0000256|HAMAP-Rule:MF_01306}.
CC   -!- FUNCTION: With S5 and S12 plays an important role in translational
CC       accuracy. {ECO:0000256|HAMAP-Rule:MF_01306}.
CC   -!- SUBUNIT: Part of the 30S ribosomal subunit. Contacts protein S5. The
CC       interaction surface between S4 and S5 is involved in control of
CC       translational fidelity. {ECO:0000256|HAMAP-Rule:MF_01306}.
CC   -!- SIMILARITY: Belongs to the universal ribosomal protein uS4 family.
CC       {ECO:0000256|ARBA:ARBA00007465, ECO:0000256|HAMAP-Rule:MF_01306,
CC       ECO:0000256|RuleBase:RU003699}.
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DR   EMBL; CP017460; ATH59839.1; -; Genomic_DNA.
DR   EMBL; PZHR01000031; PTK59019.1; -; Genomic_DNA.
DR   EMBL; QXVN01000004; RIO44531.1; -; Genomic_DNA.
DR   EMBL; UHDS01000001; SUM54855.1; -; Genomic_DNA.
DR   AlphaFoldDB; A0A291JJB9; -.
DR   KEGG; snl:BJD96_05780; -.
DR   OrthoDB; 9803672at2; -.
DR   Proteomes; UP000217956; Chromosome.
DR   Proteomes; UP000240400; Unassembled WGS sequence.
DR   Proteomes; UP000254412; Unassembled WGS sequence.
DR   Proteomes; UP000265695; Unassembled WGS sequence.
DR   GO; GO:0015935; C:small ribosomal subunit; IEA:InterPro.
DR   GO; GO:0019843; F:rRNA binding; IEA:UniProtKB-UniRule.
DR   GO; GO:0003735; F:structural constituent of ribosome; IEA:InterPro.
DR   GO; GO:0006412; P:translation; IEA:UniProtKB-UniRule.
DR   CDD; cd00165; S4; 1.
DR   Gene3D; 3.10.290.10; RNA-binding S4 domain; 1.
DR   HAMAP; MF_01306_B; Ribosomal_S4_B; 1.
DR   InterPro; IPR022801; Ribosomal_uS4.
DR   InterPro; IPR005709; Ribosomal_uS4_bac-type.
DR   InterPro; IPR018079; Ribosomal_uS4_CS.
DR   InterPro; IPR001912; Ribosomal_uS4_N.
DR   InterPro; IPR002942; S4_RNA-bd.
DR   InterPro; IPR036986; S4_RNA-bd_sf.
DR   NCBIfam; TIGR01017; rpsD_bact; 1.
DR   PANTHER; PTHR11831; 30S 40S RIBOSOMAL PROTEIN; 1.
DR   PANTHER; PTHR11831:SF4; 37S RIBOSOMAL PROTEIN NAM9, MITOCHONDRIAL; 1.
DR   Pfam; PF00163; Ribosomal_S4; 1.
DR   Pfam; PF01479; S4; 1.
DR   SMART; SM01390; Ribosomal_S4; 1.
DR   SMART; SM00363; S4; 1.
DR   SUPFAM; SSF55174; Alpha-L RNA-binding motif; 1.
DR   PROSITE; PS00632; RIBOSOMAL_S4; 1.
DR   PROSITE; PS50889; S4; 1.
PE   3: Inferred from homology;
KW   Ribonucleoprotein {ECO:0000256|ARBA:ARBA00023274, ECO:0000256|HAMAP-
KW   Rule:MF_01306};
KW   Ribosomal protein {ECO:0000256|ARBA:ARBA00022980, ECO:0000256|HAMAP-
KW   Rule:MF_01306};
KW   RNA-binding {ECO:0000256|ARBA:ARBA00022884, ECO:0000256|HAMAP-
KW   Rule:MF_01306};
KW   rRNA-binding {ECO:0000256|ARBA:ARBA00022730, ECO:0000256|HAMAP-
KW   Rule:MF_01306}.
FT   DOMAIN          3..91
FT                   /note="Small ribosomal subunit protein uS4 N-terminal"
FT                   /evidence="ECO:0000259|SMART:SM01390"
FT   DOMAIN          92..166
FT                   /note="RNA-binding S4"
FT                   /evidence="ECO:0000259|SMART:SM00363"
FT   REGION          20..44
FT                   /note="Disordered"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ   SEQUENCE   200 AA;  23060 MW;  EA39DF244C1D0EE3 CRC64;
     MARFRGSNWK KSRRLGISLS GTGKELEKRP YAPGQHGPNQ RKKMSEYGLQ LREKQKLRYL
     YGVTERQFHN TFEIAGNQQG VHGENFMQLL ASRLDAVVYS LGLARTRRQA RQIVNHGHIE
     VDGKRVDIPS YTLKPGQEVS VREKSAKLDI IAESVEINNF VPEYLEFDAD NLKGKFIRIP
     ERSELPAEIN EQLIVEYYSR
//
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