ID   A0A2A2JQT1_9BILA        Unreviewed;       958 AA.
AC   A0A2A2JQT1;
DT   20-DEC-2017, integrated into UniProtKB/TrEMBL.
DT   20-DEC-2017, sequence version 1.
DT   13-SEP-2023, entry version 12.
DE   RecName: Full=RNA polymerase II assembly factor Rtp1 C-terminal domain-containing protein {ECO:0008006|Google:ProtNLM};
GN   ORFNames=WR25_04941 {ECO:0000313|EMBL:PAV64030.1};
OS   Diploscapter pachys.
OC   Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida;
OC   Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Diploscapter.
OX   NCBI_TaxID=2018661 {ECO:0000313|EMBL:PAV64030.1, ECO:0000313|Proteomes:UP000218231};
RN   [1] {ECO:0000313|EMBL:PAV64030.1, ECO:0000313|Proteomes:UP000218231}
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=PF1309 {ECO:0000313|EMBL:PAV64030.1};
RA   Fradin H., Zegar C., Gutwein M., Lucas J., Kovtun M., Corcoran D.,
RA   Baugh L.R., Kiontke K., Gunsalus K., Fitch D.H., Piano F.;
RT   "Genome architecture and evolution of a unichromosomal asexual nematode.";
RL   Curr. Biol. 0:0-0(2017).
CC   -!- SIMILARITY: Belongs to the Tango6 family.
CC       {ECO:0000256|ARBA:ARBA00005724}.
CC   -!- CAUTION: The sequence shown here is derived from an EMBL/GenBank/DDBJ
CC       whole genome shotgun (WGS) entry which is preliminary data.
CC       {ECO:0000313|EMBL:PAV64030.1}.
CC   ---------------------------------------------------------------------------
CC   Copyrighted by the UniProt Consortium, see https://www.uniprot.org/terms
CC   Distributed under the Creative Commons Attribution (CC BY 4.0) License
CC   ---------------------------------------------------------------------------
DR   EMBL; LIAE01010286; PAV64030.1; -; Genomic_DNA.
DR   AlphaFoldDB; A0A2A2JQT1; -.
DR   STRING; 2018661.A0A2A2JQT1; -.
DR   Proteomes; UP000218231; Unassembled WGS sequence.
DR   Gene3D; 1.25.10.10; Leucine-rich Repeat Variant; 1.
DR   InterPro; IPR011989; ARM-like.
DR   InterPro; IPR016024; ARM-type_fold.
DR   InterPro; IPR019451; Rtp1_C1.
DR   InterPro; IPR019414; Rtp1_C2.
DR   InterPro; IPR039600; TANGO6/Rtp1.
DR   PANTHER; PTHR20959; TRANSPORT AND GOLGI ORGANIZATION PROTEIN 6 FAMILY MEMBER; 1.
DR   PANTHER; PTHR20959:SF1; TRANSPORT AND GOLGI ORGANIZATION PROTEIN 6 HOMOLOG; 1.
DR   Pfam; PF10363; RTP1_C1; 1.
DR   Pfam; PF10304; RTP1_C2; 1.
DR   SUPFAM; SSF48371; ARM repeat; 1.
PE   3: Inferred from homology;
KW   Reference proteome {ECO:0000313|Proteomes:UP000218231}.
FT   DOMAIN          691..812
FT                   /note="RNA polymerase II assembly factor Rtp1 C-terminal"
FT                   /evidence="ECO:0000259|Pfam:PF10363"
FT   DOMAIN          906..937
FT                   /note="RNA polymerase II assembly factor Rtp1 C-terminal"
FT                   /evidence="ECO:0000259|Pfam:PF10304"
SQ   SEQUENCE   958 AA;  108746 MW;  9BDAAF49C3D2C82B CRC64;
     MSEKDRLIEC LECLKILTTK DTDLDLKKFK WDIFAALHSK LVEKVESTNF FSEILQEEPE
     ASSSNSSSQP SESVAHVDGR LLLGDVLQKI FDEISSSLRL LNRTTDDEFK LLSLDDVQTI
     SAAFQFFILT SLLPFFEDGV GLPPHRRSNF IKQWKRLTSD QEFQKEKLKS ASSCLERLLN
     SNEALKIELI RKYLDDVICA MEQASIGNRL SSILTSENGL QHMLNAYQEL AGPTFWDNTP
     MLESIARHFA VPPKTMKKST YYENLVSQFF AILMKEESGQ MGSKISMIFA AFCDELRKRD
     KLAFGVLVLD RIFHPWERFL ESTITSVVVT KQMIEGITLL AMWGSSKTAR NFIFEEKRMT
     GLLPIFLDLL TSSCLNSEAS SQMSKDLSNK LQSTVKFVLG QSENKKSSSI WQYEESKQKM
     ITVLNSELDS DDEDAGDVDR LTLQNLDDES ILYRRVQMIC GFIKANFDAS KLVPLLFELS
     IKSVKQWSEV EQQTQVQNIE DQPRFVSNEI ANLVDSEWTQ LASHLMADSF FELISESDVD
     PTDENVLLSM ITLAQTVLKS TRTLIEARMQ KEEDLDVVSK QNEESNRVLQ LSIKSSKMVT
     ALVGAIVLVA TNSERAKTHL ADLSAEMGKF SKIANLPVKI DDSLRNELRE IAADVTQLAE
     LLQGVGIEKT EVEQEGKKAT YSKPSSRPLV ETLLEELNDE MEPIRGQALL TVAKLVRKRN
     PEVLKCLDEW LYGKVKELVA DPDSYVFLMA INALGEIALH DTKYLEDLIE FFVTYKGPEE
     PEHADQPKDD SAVIVRGKVA ETIGKVFRFS GDFAPLWFNR FFGICIDSLR DLHDVMRASV
     LSTLSDLTLA CRGRGIEKYL TEIFTTVDSL LKYEQSELVR RSAVHLLRQC IRSAASDNLF
     EVLGANLRDL RRTLTWLWKW DKDHIVRLHA QLAIEEIAEG MKILTTSPDS DHIRKIQL
//