ID A0A2A4M3Z4_9BACT Unreviewed; 489 AA.
AC A0A2A4M3Z4;
DT 20-DEC-2017, integrated into UniProtKB/TrEMBL.
DT 20-DEC-2017, sequence version 1.
DT 13-SEP-2023, entry version 24.
DE SubName: Full=RNA polymerase sigma-54 factor {ECO:0000313|EMBL:PCH54467.1};
GN Name=rpoN {ECO:0000313|EMBL:PCH54467.1};
GN ORFNames=COC21_04795 {ECO:0000313|EMBL:PCH54467.1};
OS Verrucomicrobiales bacterium.
OC Bacteria; Verrucomicrobiota; Verrucomicrobiae; Verrucomicrobiales.
OX NCBI_TaxID=2026801 {ECO:0000313|EMBL:PCH54467.1, ECO:0000313|Proteomes:UP000219702};
RN [1] {ECO:0000313|Proteomes:UP000219702}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RA Tully B.J., Wheat C.G., Glazer B.T., Huber J.A.;
RT "A dynamic microbial community with high functional redundancy inhabits the
RT cold, oxic subseafloor aquifer.";
RL Submitted (AUG-2017) to the EMBL/GenBank/DDBJ databases.
CC -!- SIMILARITY: Belongs to the sigma-54 factor family.
CC {ECO:0000256|ARBA:ARBA00008798}.
CC -!- CAUTION: The sequence shown here is derived from an EMBL/GenBank/DDBJ
CC whole genome shotgun (WGS) entry which is preliminary data.
CC {ECO:0000313|EMBL:PCH54467.1}.
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DR EMBL; NVQP01000078; PCH54467.1; -; Genomic_DNA.
DR AlphaFoldDB; A0A2A4M3Z4; -.
DR Proteomes; UP000219702; Unassembled WGS sequence.
DR GO; GO:0000428; C:DNA-directed RNA polymerase complex; IEA:UniProtKB-KW.
DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW.
DR GO; GO:0001216; F:DNA-binding transcription activator activity; IEA:InterPro.
DR GO; GO:0016779; F:nucleotidyltransferase activity; IEA:UniProtKB-KW.
DR GO; GO:0016987; F:sigma factor activity; IEA:UniProtKB-KW.
DR GO; GO:0006352; P:DNA-templated transcription initiation; IEA:InterPro.
DR Gene3D; 1.10.10.60; Homeodomain-like; 1.
DR Gene3D; 1.10.10.1330; RNA polymerase sigma-54 factor, core-binding domain; 1.
DR InterPro; IPR000394; RNA_pol_sigma_54.
DR InterPro; IPR007046; RNA_pol_sigma_54_core-bd.
DR InterPro; IPR007634; RNA_pol_sigma_54_DNA-bd.
DR InterPro; IPR038709; RpoN_core-bd_sf.
DR NCBIfam; TIGR02395; rpoN_sigma; 1.
DR PANTHER; PTHR32248; RNA POLYMERASE SIGMA-54 FACTOR; 1.
DR PANTHER; PTHR32248:SF4; RNA POLYMERASE SIGMA-54 FACTOR; 1.
DR Pfam; PF00309; Sigma54_AID; 1.
DR Pfam; PF04963; Sigma54_CBD; 1.
DR Pfam; PF04552; Sigma54_DBD; 1.
DR PIRSF; PIRSF000774; RpoN; 1.
DR PRINTS; PR00045; SIGMA54FCT.
DR PROSITE; PS00718; SIGMA54_2; 1.
DR PROSITE; PS50044; SIGMA54_3; 1.
PE 3: Inferred from homology;
KW DNA-binding {ECO:0000256|ARBA:ARBA00023125};
KW DNA-directed RNA polymerase {ECO:0000256|ARBA:ARBA00022478};
KW Nucleotidyltransferase {ECO:0000256|ARBA:ARBA00022695};
KW Sigma factor {ECO:0000256|ARBA:ARBA00023082};
KW Transcription {ECO:0000256|ARBA:ARBA00023163};
KW Transcription regulation {ECO:0000256|ARBA:ARBA00023015};
KW Transferase {ECO:0000256|ARBA:ARBA00022679}.
FT DOMAIN 131..315
FT /note="RNA polymerase sigma factor 54 core-binding"
FT /evidence="ECO:0000259|Pfam:PF04963"
FT DOMAIN 330..487
FT /note="RNA polymerase sigma factor 54 DNA-binding"
FT /evidence="ECO:0000259|Pfam:PF04552"
FT REGION 47..86
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 104..123
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 47..66
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 489 AA; 55173 MW; E70DD43411AD0E16 CRC64;
MSLNQVLAPQ LQQSLNLLQA PMLELKAMID QELQANPVLE EQAALDMDAR ERGETDEAEE
AKVDLAEPPS DTQYDPTDES NAGEPVDDFQ KEINQLLELD QDWRDHFSST NLPSRNSRDE
DEKRQFMLDS VTTTQSLQDV MLEQARLSDL GEPRFKIAEL IIGNIDDAGF LQSSVDELVF
SSGSPSGEIQ AVLDVVQTFH PPGIAARDLR ECLMLQLERA ARADSLEYRI IRDCMNELGR
RRIREIAKKT GETVDTVQDA LEHIGHLEPK PGREYMPETN QFVVPEIFIS RGDDGEWKVT
SNNEYIPRLR ISNAYKDLMA QAATSGDVRN YIRDKIRSGK FLLKSIHQRQ STILNIAKEI
LKRQGEFMEH GASRLRPMTM SQVADVVGVH ETTVSRAVSG KYIETPHGVL EMKYFFTSGL
ASKDGSSLAN TSVKEMLGEL VKKEDANKPL SDEDLVKLFT DKGIKIARRT VAKYRAELNI
LPSHLRRVY
//
