ID A0A2A9NZ95_9AGAR Unreviewed; 880 AA.
AC A0A2A9NZ95;
DT 20-DEC-2017, integrated into UniProtKB/TrEMBL.
DT 20-DEC-2017, sequence version 1.
DT 24-JAN-2024, entry version 18.
DE RecName: Full=HRDC domain-containing protein {ECO:0000259|PROSITE:PS50967};
GN ORFNames=AMATHDRAFT_137825 {ECO:0000313|EMBL:PFH53303.1};
OS Amanita thiersii Skay4041.
OC Eukaryota; Fungi; Dikarya; Basidiomycota; Agaricomycotina; Agaricomycetes;
OC Agaricomycetidae; Agaricales; Pluteineae; Amanitaceae; Amanita.
OX NCBI_TaxID=703135 {ECO:0000313|EMBL:PFH53303.1, ECO:0000313|Proteomes:UP000242287};
RN [1] {ECO:0000313|EMBL:PFH53303.1, ECO:0000313|Proteomes:UP000242287}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=SKay4041 {ECO:0000313|EMBL:PFH53303.1,
RC ECO:0000313|Proteomes:UP000242287};
RG DOE Joint Genome Institute;
RA Hess J., Skrede I., Wolfe B., LaButti K., Ohm R.A., Grigoriev I.V.,
RA Pringle A.;
RT "Transposable element dynamics among asymbiotic and ectomycorrhizal Amanita
RT fungi.";
RL Submitted (FEB-2014) to the EMBL/GenBank/DDBJ databases.
CC -!- SUBCELLULAR LOCATION: Nucleus, nucleolus
CC {ECO:0000256|ARBA:ARBA00004604}.
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DR EMBL; KZ301974; PFH53303.1; -; Genomic_DNA.
DR AlphaFoldDB; A0A2A9NZ95; -.
DR STRING; 703135.A0A2A9NZ95; -.
DR OrthoDB; 2880475at2759; -.
DR Proteomes; UP000242287; Unassembled WGS sequence.
DR GO; GO:0000176; C:nuclear exosome (RNase complex); IEA:InterPro.
DR GO; GO:0000175; F:3'-5'-RNA exonuclease activity; IEA:InterPro.
DR GO; GO:0003676; F:nucleic acid binding; IEA:InterPro.
DR GO; GO:0000166; F:nucleotide binding; IEA:InterPro.
DR GO; GO:0000467; P:exonucleolytic trimming to generate mature 3'-end of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA); IEA:InterPro.
DR CDD; cd06147; Rrp6p_like_exo; 1.
DR Gene3D; 1.10.150.80; HRDC domain; 1.
DR Gene3D; 3.30.420.10; Ribonuclease H-like superfamily/Ribonuclease H; 1.
DR InterPro; IPR002562; 3'-5'_exonuclease_dom.
DR InterPro; IPR012588; Exosome-assoc_fac_Rrp6_N.
DR InterPro; IPR010997; HRDC-like_sf.
DR InterPro; IPR002121; HRDC_dom.
DR InterPro; IPR044876; HRDC_dom_sf.
DR InterPro; IPR012337; RNaseH-like_sf.
DR InterPro; IPR036397; RNaseH_sf.
DR InterPro; IPR045092; Rrp6-like.
DR PANTHER; PTHR12124:SF47; EXOSOME COMPONENT 10; 1.
DR PANTHER; PTHR12124; POLYMYOSITIS/SCLERODERMA AUTOANTIGEN-RELATED; 1.
DR Pfam; PF01612; DNA_pol_A_exo1; 1.
DR Pfam; PF00570; HRDC; 1.
DR Pfam; PF08066; PMC2NT; 1.
DR SMART; SM00474; 35EXOc; 1.
DR SMART; SM00341; HRDC; 1.
DR SUPFAM; SSF47819; HRDC-like; 1.
DR SUPFAM; SSF53098; Ribonuclease H-like; 1.
DR PROSITE; PS50967; HRDC; 1.
PE 4: Predicted;
KW Exosome {ECO:0000256|ARBA:ARBA00022835};
KW Reference proteome {ECO:0000313|Proteomes:UP000242287};
KW rRNA processing {ECO:0000256|ARBA:ARBA00022552}.
FT DOMAIN 491..572
FT /note="HRDC"
FT /evidence="ECO:0000259|PROSITE:PS50967"
FT REGION 825..880
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 880 AA; 98884 MW; DAE877FAB1F7484C CRC64;
MDTDPSSFDQ LNKNLQQYAL KATRHALHIP SDVAFHRSMD STLGKDIDAV SVRILALTNS
LLSLGSNLDL TIEAKGRGQG KSPLENQDDV VDSFHSLVVD PVDRLLERTD MCLDEYLGRT
KPPAIIINPT ISNKPAKKSM QAFTGHLDPA LQHAAHISKP QQQFKRKPDN SDGPWYPSLF
HKYNAKVPLG YDYRDPQEQG DEAPIQNHPY RYEIVHFTPP QHMFVSQTSV SPLPLSATPY
TWVSTLDAFQ AMLSKLRQVQ EIAVDLEHHN YRTYSGFVCL MQLSTRQEDW IVDTLALREE
LVELNEVFTD PEIVKVFHGA ESDIVWLQQD FNLYVVNLFD TFHASKLLDF PRHGLANLLE
MYCDIIPDKK YQLADWRIRP LPEEMIQYAR SDTHFLLYIY DCLRNALIDR SRSSSPSGTL
SSWCSSTPVP ASGTVPSLLL IAISRSRDTS LRTYQKEMYD TICGSGPNGW DTLARKWNKP
LLLANNDSAI GKVQRSIYYS THAWRDKVAR EEDESIRYVL PNHYLFLLAE QPPSDMATLL
KAFPSGPPPV IRRRAQELLD VVREALKASS LSALPTDAAN NENNIAASQS SDSIHSETAA
DEEANCNVQL LQRSVAEIDI WTISDIPKAV NGSSLFKSKS SPVPAPNVKP IASRMSSLFG
RLVCALWSLL MPSIRFLQDP CRVEPTTRFK DLVSRINSTL VIAPSLTKVC VCELSAELEL
IPHIKLRINN ATEITVHPQT KAEPVTDMLG VDIEIPFISA AERKPKMSDP RTEDTIVVVG
QGRMKKRKHK NVALSARANR EIANVSDGTT TDNQEDFDFA AASNILDNNS DNEAEERVTK
PQKPKKQTQM TKGQFYGEFP APPKASSEFR RGNQSFTFRK
//