ID A0A2C9W240_MANES Unreviewed; 528 AA.
AC A0A2C9W240;
DT 20-DEC-2017, integrated into UniProtKB/TrEMBL.
DT 20-DEC-2017, sequence version 1.
DT 27-MAR-2024, entry version 22.
DE RecName: Full=RRM domain-containing protein {ECO:0008006|Google:ProtNLM};
GN ORFNames=MANES_04G129200 {ECO:0000313|EMBL:OAY53011.1};
OS Manihot esculenta (Cassava) (Jatropha manihot).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae;
OC Manihot.
OX NCBI_TaxID=3983 {ECO:0000313|EMBL:OAY53011.1, ECO:0000313|Proteomes:UP000091857};
RN [1] {ECO:0000313|EMBL:OAY53011.1, ECO:0000313|Proteomes:UP000091857}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. AM560-2 {ECO:0000313|Proteomes:UP000091857};
RC TISSUE=Leaf {ECO:0000313|EMBL:OAY53011.1};
RA Bredeson J.V., Prochnik S.E., Lyons J.B., Schmutz J., Grimwood J.,
RA Vrebalov J., Bart R.S., Amuge T., Ferguson M.E., Green R., Putnam N.,
RA Stites J., Rounsley S., Rokhsar D.S.;
RT "WGS assembly of Manihot esculenta.";
RL Submitted (FEB-2016) to the EMBL/GenBank/DDBJ databases.
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DR EMBL; CM004390; OAY53011.1; -; Genomic_DNA.
DR AlphaFoldDB; A0A2C9W240; -.
DR STRING; 3983.A0A2C9W240; -.
DR EnsemblPlants; OAY53011; OAY53011; MANES_04G129200.
DR Gramene; OAY53011; OAY53011; MANES_04G129200.
DR Proteomes; UP000091857; Chromosome lg4.
DR GO; GO:0005634; C:nucleus; IBA:GO_Central.
DR GO; GO:0005844; C:polysome; IBA:GO_Central.
DR GO; GO:0003729; F:mRNA binding; IBA:GO_Central.
DR CDD; cd08030; LA_like_plant; 1.
DR CDD; cd12291; RRM1_La; 1.
DR Gene3D; 3.30.70.330; -; 2.
DR Gene3D; 1.10.10.10; Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain; 1.
DR InterPro; IPR045180; La_dom_prot.
DR InterPro; IPR006630; La_HTH.
DR InterPro; IPR014886; La_xRRM.
DR InterPro; IPR012677; Nucleotide-bd_a/b_plait_sf.
DR InterPro; IPR035979; RBD_domain_sf.
DR InterPro; IPR000504; RRM_dom.
DR InterPro; IPR036388; WH-like_DNA-bd_sf.
DR InterPro; IPR036390; WH_DNA-bd_sf.
DR PANTHER; PTHR22792; LUPUS LA PROTEIN-RELATED; 1.
DR PANTHER; PTHR22792:SF133; RRM DOMAIN-CONTAINING PROTEIN; 1.
DR Pfam; PF05383; La; 1.
DR Pfam; PF00076; RRM_1; 1.
DR Pfam; PF08777; RRM_3; 1.
DR SMART; SM00715; LA; 1.
DR SMART; SM00360; RRM; 2.
DR SUPFAM; SSF54928; RNA-binding domain, RBD; 1.
DR SUPFAM; SSF46785; Winged helix' DNA-binding domain; 1.
DR PROSITE; PS50961; HTH_LA; 1.
DR PROSITE; PS50102; RRM; 1.
PE 4: Predicted;
KW Reference proteome {ECO:0000313|Proteomes:UP000091857};
KW RNA-binding {ECO:0000256|ARBA:ARBA00022884, ECO:0000256|PROSITE-
KW ProRule:PRU00332}.
FT DOMAIN 1..113
FT /note="HTH La-type RNA-binding"
FT /evidence="ECO:0000259|PROSITE:PS50961"
FT DOMAIN 122..207
FT /note="RRM"
FT /evidence="ECO:0000259|PROSITE:PS50102"
SQ SEQUENCE 528 AA; 59872 MW; FEC3BCD1E059DF06 CRC64;
MIQFSYLIVQ VEFYFSDSNL PRDDFLMKKV SQSKDSSILL FNPYMLDLVL VSLALICSFS
RVRAFLGLGK IRQDDIPHRV LKSVAEILRK SDFLKVSDDG KKVGRVKKLS KPEKIVQQMD
ERTIAASPFQ YDVTMENVES FFAKFGKLNS VRLPRHAADK RVFCGTALVE FSTDGDVKDI
LKAKLVYDGA ILELKPKKEF DAERARMTER IEKECSNHKS NASKTSNYPK GLMIAFSLKR
KSTGKPVKNG GNVEPVANSG GVCKEDKDLD CNDHIVREIE NVSEDNAEGA QKETCKIAEK
SEQIVSQRIV NSRNSILKTA KKNCKEIISE ESKAEYMQEA IRDQSPERVC QGSSEKVTGV
KRCTAFSHEE KDILLCEDLK DVFQRFGAVK CVDYQEGAVS GYIHFHEPEG AIKACAAAEF
IEGGLIVKNF IVSFEAVIGR LQTLRTCYLV QPEFIFLKLR VQILERHGYP CLMYPAFWIR
LVGFIYPFSE KHGCILNSAK KLQSYIHFKY LCVCLDDLPL YQSQKIRS
//
