ID A0A2G2V657_CAPBA Unreviewed; 409 AA.
AC A0A2G2V657;
DT 31-JAN-2018, integrated into UniProtKB/TrEMBL.
DT 31-JAN-2018, sequence version 1.
DT 27-MAR-2024, entry version 19.
DE RecName: Full=Pre-mRNA-processing protein 40A {ECO:0008006|Google:ProtNLM};
GN ORFNames=CQW23_31950 {ECO:0000313|EMBL:PHT28437.1};
OS Capsicum baccatum (Peruvian pepper).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum.
OX NCBI_TaxID=33114 {ECO:0000313|EMBL:PHT28437.1, ECO:0000313|Proteomes:UP000224567};
RN [1] {ECO:0000313|EMBL:PHT28437.1, ECO:0000313|Proteomes:UP000224567}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. PBC81 {ECO:0000313|Proteomes:UP000224567};
RC TISSUE=Leaf {ECO:0000313|EMBL:PHT28437.1};
RX PubMed=29089032; DOI=10.1186/s13059-017-1341-9;
RA Kim S., Park J., Yeom S.I., Kim Y.M., Seo E., Kim K.T., Kim M.S., Lee J.M.,
RA Cheong K., Shin H.S., Kim S.B., Han K., Lee J., Park M., Lee H.A.,
RA Lee H.Y., Lee Y., Oh S., Lee J.H., Choi E., Choi E., Lee S.E., Jeon J.,
RA Kim H., Choi G., Song H., Lee J., Lee S.C., Kwon J.K., Lee H.Y., Koo N.,
RA Hong Y., Kim R.W., Kang W.H., Huh J.H., Kang B.C., Yang T.J., Lee Y.H.,
RA Bennetzen J.L., Choi D.;
RT "New reference genome sequences of hot pepper reveal the massive evolution
RT of plant disease-resistance genes by retroduplication.";
RL Genome Biol. 18:R210.1-R210.11(2017).
RN [2] {ECO:0000313|Proteomes:UP000224567}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. PBC81 {ECO:0000313|Proteomes:UP000224567};
RA Kim S., Park J., Yeom S.-I., Kim Y.-M., Seo E., Kim K.-T., Kim M.-S.,
RA Lee J.M., Cheong K., Shin H.-S., Kim S.-B., Han K., Lee J., Park M.,
RA Lee H.-A., Lee H.-Y., Lee Y., Oh S., Lee J.H., Choi E., Choi E., Lee S.E.,
RA Jeon J., Kim H., Choi G., Song H., Lee J., Lee S.-C., Kwon J.-K.,
RA Lee H.-Y., Koo N., Hong Y., Kim R.W., Kang W.-H., Huh J.H., Kang B.-C.,
RA Yang T.-J., Lee Y.-H., Bennetzen J.L., Choi D.;
RT "Multiple reference genome sequences of hot pepper reveal the massive
RT evolution of plant disease resistance genes by retroduplication.";
RL J. Anim. Genet. bioRxivorg:115410-115410(2017).
CC -!- CAUTION: The sequence shown here is derived from an EMBL/GenBank/DDBJ
CC whole genome shotgun (WGS) entry which is preliminary data.
CC {ECO:0000313|EMBL:PHT28437.1}.
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DR EMBL; MLFT02000219; PHT28437.1; -; Genomic_DNA.
DR AlphaFoldDB; A0A2G2V657; -.
DR STRING; 33114.A0A2G2V657; -.
DR Proteomes; UP000224567; Unassembled WGS sequence.
DR GO; GO:0045292; P:mRNA cis splicing, via spliceosome; IEA:InterPro.
DR CDD; cd00201; WW; 1.
DR Gene3D; 2.20.70.10; -; 1.
DR Gene3D; 1.10.10.440; FF domain; 2.
DR InterPro; IPR002713; FF_domain.
DR InterPro; IPR036517; FF_domain_sf.
DR InterPro; IPR039726; Prp40-like.
DR InterPro; IPR001202; WW_dom.
DR InterPro; IPR036020; WW_dom_sf.
DR PANTHER; PTHR11864:SF36; PRE-MRNA-PROCESSING PROTEIN 40A-LIKE ISOFORM X1; 1.
DR PANTHER; PTHR11864; PRE-MRNA-PROCESSING PROTEIN PRP40; 1.
DR Pfam; PF01846; FF; 2.
DR Pfam; PF00397; WW; 1.
DR SMART; SM00441; FF; 2.
DR SMART; SM00456; WW; 1.
DR SUPFAM; SSF81698; FF domain; 2.
DR SUPFAM; SSF51045; WW domain; 1.
DR PROSITE; PS51676; FF; 2.
DR PROSITE; PS01159; WW_DOMAIN_1; 1.
DR PROSITE; PS50020; WW_DOMAIN_2; 1.
PE 4: Predicted;
KW Coiled coil {ECO:0000256|SAM:Coils};
KW Reference proteome {ECO:0000313|Proteomes:UP000224567}.
FT DOMAIN 24..56
FT /note="WW"
FT /evidence="ECO:0000259|PROSITE:PS50020"
FT DOMAIN 230..284
FT /note="FF"
FT /evidence="ECO:0000259|PROSITE:PS51676"
FT DOMAIN 297..352
FT /note="FF"
FT /evidence="ECO:0000259|PROSITE:PS51676"
FT COILED 274..301
FT /evidence="ECO:0000256|SAM:Coils"
SQ SEQUENCE 409 AA; 46043 MW; 064075ADD8401491 CRC64;
MQKTGELAAP LVVPEANYVF DPVETIQSDW IELTSRKGKK YYYNRTRIST WEKPQELMTE
MELACEKDII SHASDFGSIP VVKTSSPGAD GSLVSEHGAK SSPIAVSPAA NLPTILDSNH
QVYLVSSETT SAQDAVVYGD GFSPENREIL CWMLIQQFCS AVVSQLLTGE EYALMSSETT
SAQDAVVYGD GFSPENREDV KKDAAITEIG GATPSDEKTV ELGPLVCESK AEAKSAFKTL
LESANIGSDY TWDQAMRAVI NAWRYGALKS LGERKQAFNE YLSQKKKLEA EERRVKQKKA
REDFRIMLED WKELSSSSRW SKVISIFEHD ERFKAVERDK DREDLFEDYV EELEKKGDRT
SIVPLLLTSF VQASSQWRKV QDLLETDQRC SRLEKIDRFL GTTHFSNTS
//
