ID A0A2G2VFP2_CAPBA Unreviewed; 733 AA.
AC A0A2G2VFP2;
DT 31-JAN-2018, integrated into UniProtKB/TrEMBL.
DT 31-JAN-2018, sequence version 1.
DT 27-MAR-2024, entry version 22.
DE RecName: Full=RNase H type-1 domain-containing protein {ECO:0008006|Google:ProtNLM};
GN ORFNames=CQW23_28141 {ECO:0000313|EMBL:PHT31804.1};
OS Capsicum baccatum (Peruvian pepper).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum.
OX NCBI_TaxID=33114 {ECO:0000313|EMBL:PHT31804.1, ECO:0000313|Proteomes:UP000224567};
RN [1] {ECO:0000313|EMBL:PHT31804.1, ECO:0000313|Proteomes:UP000224567}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. PBC81 {ECO:0000313|Proteomes:UP000224567};
RC TISSUE=Leaf {ECO:0000313|EMBL:PHT31804.1};
RX PubMed=29089032; DOI=10.1186/s13059-017-1341-9;
RA Kim S., Park J., Yeom S.I., Kim Y.M., Seo E., Kim K.T., Kim M.S., Lee J.M.,
RA Cheong K., Shin H.S., Kim S.B., Han K., Lee J., Park M., Lee H.A.,
RA Lee H.Y., Lee Y., Oh S., Lee J.H., Choi E., Choi E., Lee S.E., Jeon J.,
RA Kim H., Choi G., Song H., Lee J., Lee S.C., Kwon J.K., Lee H.Y., Koo N.,
RA Hong Y., Kim R.W., Kang W.H., Huh J.H., Kang B.C., Yang T.J., Lee Y.H.,
RA Bennetzen J.L., Choi D.;
RT "New reference genome sequences of hot pepper reveal the massive evolution
RT of plant disease-resistance genes by retroduplication.";
RL Genome Biol. 18:R210.1-R210.11(2017).
RN [2] {ECO:0000313|Proteomes:UP000224567}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. PBC81 {ECO:0000313|Proteomes:UP000224567};
RA Kim S., Park J., Yeom S.-I., Kim Y.-M., Seo E., Kim K.-T., Kim M.-S.,
RA Lee J.M., Cheong K., Shin H.-S., Kim S.-B., Han K., Lee J., Park M.,
RA Lee H.-A., Lee H.-Y., Lee Y., Oh S., Lee J.H., Choi E., Choi E., Lee S.E.,
RA Jeon J., Kim H., Choi G., Song H., Lee J., Lee S.-C., Kwon J.-K.,
RA Lee H.-Y., Koo N., Hong Y., Kim R.W., Kang W.-H., Huh J.H., Kang B.-C.,
RA Yang T.-J., Lee Y.-H., Bennetzen J.L., Choi D.;
RT "Multiple reference genome sequences of hot pepper reveal the massive
RT evolution of plant disease resistance genes by retroduplication.";
RL J. Anim. Genet. bioRxivorg:115410-115410(2017).
CC -!- CAUTION: The sequence shown here is derived from an EMBL/GenBank/DDBJ
CC whole genome shotgun (WGS) entry which is preliminary data.
CC {ECO:0000313|EMBL:PHT31804.1}.
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DR EMBL; MLFT02000012; PHT31804.1; -; Genomic_DNA.
DR AlphaFoldDB; A0A2G2VFP2; -.
DR Proteomes; UP000224567; Chromosome 12.
DR GO; GO:0003676; F:nucleic acid binding; IEA:InterPro.
DR GO; GO:0004523; F:RNA-DNA hybrid ribonuclease activity; IEA:InterPro.
DR CDD; cd06222; RNase_H_like; 1.
DR Gene3D; 3.30.420.10; Ribonuclease H-like superfamily/Ribonuclease H; 1.
DR InterPro; IPR044730; RNase_H-like_dom_plant.
DR InterPro; IPR002156; RNaseH_domain.
DR InterPro; IPR036397; RNaseH_sf.
DR InterPro; IPR012942; SRR1-like.
DR InterPro; IPR040044; SRR1L.
DR PANTHER; PTHR28626:SF4; OS04G0588900 PROTEIN; 1.
DR PANTHER; PTHR28626; SRR1-LIKE PROTEIN; 1.
DR Pfam; PF14223; Retrotran_gag_2; 1.
DR Pfam; PF13456; RVT_3; 1.
DR Pfam; PF07985; SRR1; 1.
PE 4: Predicted;
KW Reference proteome {ECO:0000313|Proteomes:UP000224567}.
FT DOMAIN 258..402
FT /note="SRR1-like"
FT /evidence="ECO:0000259|Pfam:PF07985"
FT DOMAIN 431..544
FT /note="RNase H type-1"
FT /evidence="ECO:0000259|Pfam:PF13456"
SQ SEQUENCE 733 AA; 84222 MW; 4B05143D39217103 CRC64;
MRLRLWWETS IDSTSRANAL QPMAPTEKPK KFAGIDFKRR QQKMFFYLKT LCLQRFTSED
ALEVPEGTSE KDHFIIVEVW KHSDFLCRNY ILSGLQDDLY NVYSGTKTSN KSVVSQVKEL
QVIIHDLLAE ECNLVGNPHE WWMDSGSTLH VYANKELFSL FAPAQVEEMI YIVNSATAKV
FQLVYKLLEA NVNLNHIKID AGDDMESHVD FHMKDEAERL IEEIELMMNS VKNSKFYAEI
LLDLKQHKRI RNHLIRLLGS HPHVQVVIYG LGSIESNYVS QFQLAVLLQL KREFSNWISD
IEIYYHVMSP VDIIVFKELG LEVLTIEENC KRTAQRPIMF YMPNPYNYLI GNLLGANWSA
SCLNQIFLLT NSLCDTLGKL ALVEGENLET MIRLQRILQF TTEIAIKTSE DKICIPIHSS
QVKLNIYGIG TNGDQPGRFG GVFQDHEGKW LARYKGNIDT EDDVTAGLVA LRLGMAAWKE
RKWKAEKLIG DSDNFMLVQY ANGLPEPNEN TKYMLREILD LLKFRICAVY HVYKETNEAA
RNWALKDKCP NKGPNAASER KLYVGNLHSN MTELQLRQKW LNGDKLESLQ VGVLNVEQRD
KVEEHVVEGQ VFEGTSVTRL RQLTIKFDTY KKRYEMNIKQ CLRVMSNMIT QLKSAGHILS
DEQQVQAVIR SLPNSLEHLK INLTHNDSIK SFSNVSRHVE LEDERLGAAK AVSNAFMVES
SHKNSSGFKN KKK
//
