ID A0A2G2VPR9_CAPBA Unreviewed; 979 AA.
AC A0A2G2VPR9;
DT 31-JAN-2018, integrated into UniProtKB/TrEMBL.
DT 31-JAN-2018, sequence version 1.
DT 22-FEB-2023, entry version 20.
DE SubName: Full=Transcription factor LHW {ECO:0000313|EMBL:PHT34961.1};
GN ORFNames=CQW23_26761 {ECO:0000313|EMBL:PHT34961.1};
OS Capsicum baccatum (Peruvian pepper).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum.
OX NCBI_TaxID=33114 {ECO:0000313|EMBL:PHT34961.1, ECO:0000313|Proteomes:UP000224567};
RN [1] {ECO:0000313|EMBL:PHT34961.1, ECO:0000313|Proteomes:UP000224567}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. PBC81 {ECO:0000313|Proteomes:UP000224567};
RC TISSUE=Leaf {ECO:0000313|EMBL:PHT34961.1};
RX PubMed=29089032; DOI=10.1186/s13059-017-1341-9;
RA Kim S., Park J., Yeom S.I., Kim Y.M., Seo E., Kim K.T., Kim M.S., Lee J.M.,
RA Cheong K., Shin H.S., Kim S.B., Han K., Lee J., Park M., Lee H.A.,
RA Lee H.Y., Lee Y., Oh S., Lee J.H., Choi E., Choi E., Lee S.E., Jeon J.,
RA Kim H., Choi G., Song H., Lee J., Lee S.C., Kwon J.K., Lee H.Y., Koo N.,
RA Hong Y., Kim R.W., Kang W.H., Huh J.H., Kang B.C., Yang T.J., Lee Y.H.,
RA Bennetzen J.L., Choi D.;
RT "New reference genome sequences of hot pepper reveal the massive evolution
RT of plant disease-resistance genes by retroduplication.";
RL Genome Biol. 18:R210.1-R210.11(2017).
RN [2] {ECO:0000313|Proteomes:UP000224567}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. PBC81 {ECO:0000313|Proteomes:UP000224567};
RA Kim S., Park J., Yeom S.-I., Kim Y.-M., Seo E., Kim K.-T., Kim M.-S.,
RA Lee J.M., Cheong K., Shin H.-S., Kim S.-B., Han K., Lee J., Park M.,
RA Lee H.-A., Lee H.-Y., Lee Y., Oh S., Lee J.H., Choi E., Choi E., Lee S.E.,
RA Jeon J., Kim H., Choi G., Song H., Lee J., Lee S.-C., Kwon J.-K.,
RA Lee H.-Y., Koo N., Hong Y., Kim R.W., Kang W.-H., Huh J.H., Kang B.-C.,
RA Yang T.-J., Lee Y.-H., Bennetzen J.L., Choi D.;
RT "Multiple reference genome sequences of hot pepper reveal the massive
RT evolution of plant disease resistance genes by retroduplication.";
RL J. Anim. Genet. bioRxivorg:115410-115410(2017).
CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|ARBA:ARBA00004123}.
CC -!- CAUTION: The sequence shown here is derived from an EMBL/GenBank/DDBJ
CC whole genome shotgun (WGS) entry which is preliminary data.
CC {ECO:0000313|EMBL:PHT34961.1}.
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DR EMBL; MLFT02000011; PHT34961.1; -; Genomic_DNA.
DR AlphaFoldDB; A0A2G2VPR9; -.
DR STRING; 33114.A0A2G2VPR9; -.
DR Proteomes; UP000224567; Chromosome 11.
DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
DR GO; GO:0003700; F:DNA-binding transcription factor activity; IEA:InterPro.
DR GO; GO:0046983; F:protein dimerization activity; IEA:InterPro.
DR CDD; cd18915; bHLH_AtLHW_like; 1.
DR InterPro; IPR011598; bHLH_dom.
DR InterPro; IPR043561; LHW-like.
DR InterPro; IPR025610; MYC/MYB_N.
DR PANTHER; PTHR46196; TRANSCRIPTION FACTOR BHLH155-LIKE ISOFORM X1-RELATED; 1.
DR PANTHER; PTHR46196:SF4; TRANSCRIPTION FACTOR LHW; 1.
DR Pfam; PF14215; bHLH-MYC_N; 1.
DR PROSITE; PS50888; BHLH; 1.
PE 4: Predicted;
KW Nucleus {ECO:0000256|ARBA:ARBA00023242};
KW Reference proteome {ECO:0000313|Proteomes:UP000224567};
KW Transcription {ECO:0000256|ARBA:ARBA00023163};
KW Transcription regulation {ECO:0000256|ARBA:ARBA00023015}.
FT DOMAIN 717..766
FT /note="BHLH"
FT /evidence="ECO:0000259|PROSITE:PS50888"
FT REGION 688..732
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 688..706
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 707..732
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 979 AA; 106792 MW; 7015CA42EC612EEE CRC64;
MGYLLKEVLK TLCGVNQWSY AVYWKIGCQN TKLLIWEESY YEPLTFSGIH RISGVENPEL
SFHDWDACRG SGEVRMHQAG ERVHLLVNKM MMESQINLVG EGLVGRAAVT GCHQWFHSED
FSRVVHPPEV LKGLTEQFSA GIQTIAVVPV LPHGVVQFGS CLNIMENMSF VEDVRILISQ
LGCVPGVLLS DENASKDPIV NTGAPGCQGS SVFVDSCGRA KVMNSAPDIA GCSFQNNSSQ
RDGFICQTSS SPTAQVRDRM QFTDATFQAS SMTQSFVESH DRQFHKKIVP EVNAHLSPNS
QLIHNMIKAE VISPSSNMWM NQQASLHIPR PPFHQQSSTD SLTVDSACLS NVSQLNGFAA
SDPRLSNVLI SNCHGNLIYP SVGENELCKQ LDGHHRSIPC PNSIADANEL SNKINSCTES
AGNGLQTVSK LNASSSFVGD ALITSHISDG QGAQFMWDES NGVVENDLFQ ALGIMLTQNE
HLCSTSKPMQ EVYGEKHEYV GQNALPENNQ YEDSCVQRNS GDDLFDVLGA DFKDKLLNGN
KNSYQTTGPD LNTRDHVKNN STSVISQYAS STVHQGKSDS GSFSVAGFER LLGSIASKPS
AKQNLDDDVS CRTTLTNLSS SSAPHVSSSY GRRGLSSQIQ GEVFGQAKTL AKSGVTVSRS
LGSEKAISGA YSQSSSIYGS QISSWVEQGH DTKPTSSVST GYSKKPDETS KTGRKRLKPG
ENPRPRPKDR QMIQDRVKEL REIVPNGAKC SIDSLLERTI KHMLFLQSVT KHADKLKQTG
ESKIISKEGG LLLKDNFEGG ATWAYEVGSQ SMVCPIIVED LNQPRQMLVE MLCEERGLFL
EIADIVRGLG LTILKGVLET RNDKIWARFA VEANRDVTRM EIFISLVRLL EQTSKGGGEE
SANPIDNDTK MTMSAAEKDK AVQQAAASTT QEAITIGQSP VLVDLNRTQE SLLGSMLSGS
QMPGTKGPTG FLHPQWCQQ
//
